RetrogeneDB ID:
retro_ecab_599
Organism:
Horse ( Equus_caballus )
Location:
23:1947954-1948298 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.26 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL30
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]

Genomic region (view in browser)





>retro_ecab_599
ATGGTGGCTGGAAAGAAGATGAAAAAGTCACCCGAGTCCATCAACTCTAGGCTCCAACTC
ATTACGATAAATGGAAAGAATACACAGGGTTCCAAGCCGACTTGCAAATGATCTGACGAG
ACAACGGGAACGCAGTCACCGTCACCAGAAACTGCCCAGCCTTGAGGCACTGCAAAACAC
TGTAGAGCTGTGCCATGTGGGCCAAACGTGGGGTCCACCGCTACAGCAGCAGCACTGAAG
TGGGCACAGCGTGTGGAAAATACGACAGGGTGTGCACACTGGCTGTCACTGGTCCAGGAG
ATTCTGCTATCATTAGAAGCAAGCCAGGATAAACCGGTGAAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQT-LKMIRQGKAKLVILANNCPALRKSE-IEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIID
MVA.KK.KKS.ESINSRLQL....GK...G.K.T.L.MI.......V....NCPALR........AM.AK.GVH.YS....E.GTACGKY.RVCTLA...
Retrocopy
MVAGKKMKKSPESINSRLQLITINGKNTQGSKPT/LQMI*RDNGNAVTVTRNCPALRHCKTL*SCAMWAKRGVHRYS-SSTEVGTACGKYDRVCTLAVTG


Parental protein
PGDSDIIRSMPEQTGEK
PGDS.IIRS.P..TGE.
Retrocopy
PGDSAIIRSKPG*TGEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide