RetrogeneDB ID:
retro_ecab_6
Organism:
Horse ( Equus_caballus )
Location:
2:71046665-71048546 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.03 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TKTL1
Parental gene aliases:
No gene alias available
Parental gene description:
transketolase-like 1 [Source:HGNC Symbol;Acc:11835]

Genomic region (view in browser)





>retro_ecab_6
ACCATAGCCGACAACGCCAAGCCCCGTGCGAATACGTTGCAGGTGCTGCGGGACATGGCC
AACCGCCTGCGGATCCATTCCATCAGGGCCACGTGTGCCTCCCGCTCCGGCCACCCCACG
TCGTGCTGCAGCGCAGCTGAGATCATGTCCGTGCTGTTCTTCCACACGATGCGGTATAAA
CAGACAGAGCCGGAACACCCTGACAACGACCGATTCATCCTCTCCAAGGGCCATGCTGCT
CCCATCCTCTATGCGGCTTGGGCAGAGCTGGGCATCATCAGTGAATCCGACTTGCTGAAC
TTGAGGAAAATTAACTGTGACTTAGAGGGACATCCCACCCCAAGACTGTCGTTCGTTGAT
GTGGCAACCGGATCGCTTGGGCAAGGATTGGGTGCCGCCTGCGGAATGGCTTATACTGGC
AAGTACTTTGACAAGGCCAGCTACCGAGTGTTCTGCCTTATGGGAGATGGTGAATCCTCG
GAAGGTTCAGTCTGGGAGGCTCTGGACTTCGCTTCCCACTACAATTTGGACAATCTCGTG
GCAGTCTTTGACGTGAACCGTTTGGGACAAAGTGGTGTCACGCCCCTTGAGCACTGCACA
GACGTCTATCAGAATCGCTGTGAAGCCTTTGGGTGGAATACTTACTTAGTGGATGGCCAT
GATGTGGAGGGGTTGTGCCATGCGTTCTGGCAAGCAACTCAAGTGAAGAACAAGCCCACT
GCCATAGTAGCCAAGACCTTCAAGGGCCGGGGTATTCCAGACATTGAGGATGCAGAAAAT
TGGCATGGAAAGCCAATGCCAAAAGAAAGAGCAGATGCAATCATCAAATTAATTGAGAGT
CAGATACAGACCAATAGAAATTTCATAGTGAAACCCCCTCTTGAAGACTCACCGCAAGTC
AGCATCAGGAATATAAAAATGACCTGTCTGCCTGATTATGAAGTTGGTGACAAGATAGCT
ACTCAGAAAGCATATGGTTTGGCTCTGGTTAAACTGGGACGTGCAAATGACAGACTTATT
GTGCTGGATGGTGACGCAAAGAACTCCACCTTTTCTGAGATATTCAAGAAAGAATACCCT
GAGCGTTTCATTGAGTGTGTTATGGCTGAGCAAAACATGGTAAGTGTGGCACTGGGCTGC
GCCACACGTGATCGAACTGTTGCTTTTATTAGTACCCTTGCTGCCTGTTTGACCCGAGCA
TTTGATCAGATCCGGATGGGAGCCATATCTCAAACCAATATCAATCTTATTGGTTCCCAC
TGCGGGGTATCTATGGGTGAAGAAGGATCCTCCCAGATGGCTCTGGAGGATCTCGCCATG
TTCCGAAGCATTCCCAATTGCACCGTTTTCTATCCAAGTGATGCCATCTCGGCAGAGCAT
GCTGTTTATCTGGCTGCCAGTACCAAAGGAATGTGCTTCATTCGGACCAGCCGACAAGAA
ACTGCCGTTATTTATACCCCACAAGAAAATTTTGTGATTGGACAGGCCAGGGTCATCCGC
CACAGTGTCAATGACAAAGTTACAGTTATTGGAGCAGGAGTTACTCTCCATGAAGCCTTA
GCAGCTGCTGCTGATCTTTCTCAACAAGGCATTTCTATCCGTGTCATTGACCCGTTTACC
ATTAAACCCCTGGATGCTGCCACCATCATCTCCAGTGCAAAAGCTACAGGTGGTCGGGTT
ATCACAGTAGAGGATCACTACCGAGAAGGTGGCCTTGGAGAAGCTGTGTGTACAGCTGTC
TCTGGGGAGCCTGACATCCTTGTTCATCAGCTGGCAGTGTCAGGAGTGCCCCAAAGTGGG
AAACCTGGTGAATTGCTGGATATGTTTGGAATCAGTGCCAGACACATCATAGCTGCTGTG
AAATACACTTTAATGAACTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 118.32

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEETKPDAKTVQVLQDMANRLRIQSIRAACASSSGHPTSCSSAAEIMAVLFFHTMRYKQADPDDPDNDRFVLSKRGWPLRALRCRWTQQATISRSDLLG
.A...KP.A.T.QVL.DMANRLRI.SIRA.CAS.SGHPTSC.SAAEIM.VLFFHTMRYKQ..P..PDNDRF.LSK.G.....L...W.....IS.SDLL.
Retrocopy
IADNAKPRANTLQVLRDMANRLRIHSIRATCASRSGHPTSCCSAAEIMSVLFFHTMRYKQTEPEHPDNDRFILSK-GHAAPILYAAWAELGIISESDLLN


Parental protein
SRKIGFDLEGHPTPRLSFVDVATGWLGQGLGAACGMAYTGKYFDKASYRVFCLLGDGEFSEGSVWEALAFASHYSLDNLVAVFDVNRLGHSGTLPLENCI
.RKI..DLEGHPTPRLSFVDVATG.LGQGLGAACGMAYTGKYFDKASYRVFCL.GDGE.SEGSVWEAL.FASHY.LDNLVAVFDVNRLG.SG..PLE.C.
Retrocopy
LRKINCDLEGHPTPRLSFVDVATGSLGQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALDFASHYNLDNLVAVFDVNRLGQSGVTPLEHCT


Parental protein
DVYQKRCEAFGWNTYVVDGRDVEALCQVFWQAAQVKNKPTAVVAKTFKGRGIPNVEDAENWHGKPMPKERADAIIKLIESQIETNQNLEPKPPIEDSPQI
DVYQ.RCEAFGWNTY.VDG.DVE.LC..FWQA.QVKNKPTA.VAKTFKGRGIP..EDAENWHGKPMPKERADAIIKLIESQI.TN.N...KPP.EDSPQ.
Retrocopy
DVYQNRCEAFGWNTYLVDGHDVEGLCHAFWQATQVKNKPTAIVAKTFKGRGIPDIEDAENWHGKPMPKERADAIIKLIESQIQTNRNFIVKPPLEDSPQV


Parental protein
TITDIEMTSPPAYKDGDKIATRKACGLALAKLGHANNRVIVLDGDTKNSTFSEIFKKEHPERFIECFIAEQNMVSVALGCAIRDRTIAFVSTFAAFLTRA
.I..I.MT..P.Y..GDKIAT.KA.GLAL.KLG.AN.R.IVLDGD.KNSTFSEIFKKE.PERFIEC..AEQNMVSVALGCA.RDRT.AF.ST.AA.LTRA
Retrocopy
SIRNIKMTCLPDYEVGDKIATQKAYGLALVKLGRANDRLIVLDGDAKNSTFSEIFKKEYPERFIECVMAEQNMVSVALGCATRDRTVAFISTLAACLTRA


Parental protein
FDQIRVGAISQSNINLIGSHCGVSVGEDGPSQMALEDLAMFRAVPNCTIFYPSDAISTEHAVFLAANTKGMCYIRTSRPETSVIYTAQERFEIGQAKVVR
FDQIR.GAISQ.NINLIGSHCGVS.GE.G.SQMALEDLAMFR..PNCT.FYPSDAIS.EHAV.LAA.TKGMC.IRTSR.ET.VIYT.QE.F.IGQA.V.R
Retrocopy
FDQIRMGAISQTNINLIGSHCGVSMGEEGSSQMALEDLAMFRSIPNCTVFYPSDAISAEHAVYLAASTKGMCFIRTSRQETAVIYTPQENFVIGQARVIR


Parental protein
HSVNDKVTVIGAGVTLHEALAAADDLSKQDISVRVIDLFTIKPLDAATIISNAKATGGRIITVEDHYPEGGIGEAVCAAVSMEPDILVHQLAAPGVPQSG
HSVNDKVTVIGAGVTLHEALAAA.DLS.Q.IS.RVID.FTIKPLDAATIIS.AKATGGR.ITVEDHY.EGG.GEAVC.AVS.EPDILVHQLA..GVPQSG
Retrocopy
HSVNDKVTVIGAGVTLHEALAAAADLSQQGISIRVIDPFTIKPLDAATIISSAKATGGRVITVEDHYREGGLGEAVCTAVSGEPDILVHQLAVSGVPQSG


Parental protein
KPSELLDMFGVSARHIIVAVKCMLMN
KP.ELLDMFG.SARHII.AVK..LMN
Retrocopy
KPGELLDMFGISARHIIAAVKYTLMN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide