RetrogeneDB ID:
retro_ecab_60
Organism:
Horse ( Equus_caballus )
Location:
1:35835317-35835752 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.86 %
Coverage:
98.64 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_60
ATGAAACTCCTTGTGCTGGCTGTTCTGCTTACAGTGGGCGCTGGTGAGAGCGGCATCAGC
CCGCGGGCAGTGTGGCAGTTCCGCAGCATGATCCAGTGCACGATCCCCAACAGCAAACCC
TATTTGGAATACAATGACTACGGCTGTTACTGTGGCCTGGGTGGATCTGGCACTTCTGTG
GATGAACTGGATGCGTGCTGCCAGGTACACGACAATTGCTACACTAAGGCCAAGGAACTG
AGCAGCTGTAGATTCCTCGTGGACAACCCCTACACTGAAAGCTACAAATTCTCATGCTCT
GGCACTGAGGTCACCTGCAGCGACAAAAACAACGCCTGTGAGGCCTTTATCTGTAACTGT
GACCGAAGTGCTGCCATCTGCTTTTCAAAGGCCCCATACAACCTGGAGAACAAGAACCTG
GACAGCAAGAGGTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKLLVLAVLLTVGAGENGISPRAVWQFRSMIQCTIPNSKPYLEFNDYGCYCGLGGSGTPVDELDACCQVHDNCYTQAKELSSCRFLVDNPYTESYKFSCS
MKLLVLAVLLTVGAGE.GISPRAVWQFRSMIQCTIPNSKPYLE.NDYGCYCGLGGSGT.VDELDACCQVHDNCYT.AKELSSCRFLVDNPYTESYKFSCS
Retrocopy
MKLLVLAVLLTVGAGESGISPRAVWQFRSMIQCTIPNSKPYLEYNDYGCYCGLGGSGTSVDELDACCQVHDNCYTKAKELSSCRFLVDNPYTESYKFSCS


Parental protein
GTEVTCSDKNNACEAFICNCDRNAAICFSKAPYNPENKNLDSKRC
GTEVTCSDKNNACEAFICNCDR.AAICFSKAPYN.ENKNLDSKRC
Retrocopy
GTEVTCSDKNNACEAFICNCDRSAAICFSKAPYNLENKNLDSKRC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide