RetrogeneDB ID:
retro_ecab_600
Organism:
Horse ( Equus_caballus )
Location:
23:2242637-2243624 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
96.36 %
Coverage:
80.49 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
COPS4
Parental gene aliases:
No gene alias available
Parental gene description:
COP9 signalosome subunit 4 [Source:HGNC Symbol;Acc:16702]

Genomic region (view in browser)





>retro_ecab_600
CCTGAGAGCACAGCCAAAGAAATCTATCATTTCACCTTGGAGAAGATCCAGCCTAGAGTC
ATTTCATTTGAGGAGCAGGTTGTTTCCATAAGACAGCATCTTGCATCCATATATGAGAAA
GAAGACTGGAGAAATGCAGCCCAAGTGTTGGTGGGAATTCCTTTGGAAACAGGACAAAAA
GAATACAATGTAGATTATAAACTGGAGACATACCTGAAGATTGCTAGGCTATATCTGGAG
GATGATGATCCCGTCCAGGCAGAGGCTTACATAAATTGAGCATCATTGCTTCAGAATGAA
TCAACCAACGAACAGTTACAGATATATTATAAGGTATGCTATGCACGTGTTCTTGATTAC
AGAAGAAAATTCATTGAAGCTGCACAAAGGTACAGTGAGCTCTCTTACAAGACAATAGTG
CAGGAAAGTGAAAGACTAGAGGCCTTAAAACATGCTTTGCACTGTACCATCTTAGCATCA
GCAGGACAGCAGCGTTCTTGGATGCTAGCTACTCTTTTTAAGGAGGAAAGGTGCCAGCAA
CTTGCTGCTTATGGGATCCTAGAGAAAATGTACCTAGATAGGATCATCAGAGGAAATCAA
CTTCAAGAATTTGCTGCCATGCTGATGCCTCACCAAAAAGCAACCACAGCTGATGGTTCC
AGCATTTTGGACAGAGCTGTTACTGAACACAATTTGTTGTCTGCAAGCAAATTATATAAT
AATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCTCTGCAGCTAAGGCAGAAAAG
ATAGCATCACAAATGATAACAGAAGGCCGTATGAATGGATTTATCGATCAGATTGATGGA
ATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACATGGGACAAACAGATCCAATCACTT
TGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAGACAGCACCAGAATGGACAGCA
CAAGCCATGGAAGCCCAGATGGCTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQN
P.STAKEIYHFTLEKIQPRVISFEEQV.SIRQHLASIYEKE.DWRNAAQVLVGIPLETGQK.YNVDYKLETYLKIARLYLEDDDPVQAEAYIN.ASLLQN
Retrocopy
PESTAKEIYHFTLEKIQPRVISFEEQVVSIRQHLASIYEKE-DWRNAAQVLVGIPLETGQKEYNVDYKLETYLKIARLYLEDDDPVQAEAYIN*ASLLQN


Parental protein
ESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN
ESTNEQLQI.YKVCYARVLDYRRKFIEAAQRY.ELSYKTIV.ESERLEALKHALHCTILASAGQQRS.MLATLFK.ERCQQLAAYGILEKMYLDRIIRGN
Retrocopy
ESTNEQLQIYYKVCYARVLDYRRKFIEAAQRYSELSYKTIVQESERLEALKHALHCTILASAGQQRSWMLATLFKEERCQQLAAYGILEKMYLDRIIRGN


Parental protein
QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQS
QLQEFAAMLMPHQKATTADGSSILDRAV.EHNLLSASKLYNNITFEELGALLEI.AAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQS
Retrocopy
QLQEFAAMLMPHQKATTADGSSILDRAVTEHNLLSASKLYNNITFEELGALLEISAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQS


Parental protein
LCFQVNNLLEKISQTAPEWTAQAMEAQMAQ
LCFQVNNLLEKISQTAPEWTAQAMEAQMAQ
Retrocopy
LCFQVNNLLEKISQTAPEWTAQAMEAQMAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide