RetrogeneDB ID:
retro_ecab_601
Organism:
Horse ( Equus_caballus )
Location:
23:2722466-2723123 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.73 %
Coverage:
50.93 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TADA3
Parental gene aliases:
No gene alias available
Parental gene description:
transcriptional adaptor 3 [Source:HGNC Symbol;Acc:19422]

Genomic region (view in browser)





>retro_ecab_601
AGCAGAAGGATGGGCTGGGCTGACAAGAAGAAAGGCTTCATGGGGCCACTGACACAACTG
GACACTAAAGATGTAGATACCCTGCTAAAGAAGTCTGAGGCCCAGCAGCCGGAAGATGGG
TACCCCTTTGGTGCCCTGACGCAGAGCCTCCTGCAGGCCCTGGTGGAGGAAAATATTATT
TCCCCCGTGGAGGACTCTCCTATTCCTGACATGTCCGGGAAAGAACTGTGGGCTGATGGC
GTGAGCCCCTCCCCCGCAGTCAGACCAAGCCCTTCAGTGTGCCACACACCAAGTGCCTGG
AGAGCCAGCCGCATCAAGGAGGAGCTGATTGCCCAGGGCCTGCTGGAGTCTGAGGAACGC
CCTGCAGAAGGCTCAGAGGATGAGGTCCTCGTGGAGCTGTGCAGACAGCAGGCCGAGCTG
AAGGCACTCAGTGCCCACAACCACACCAAGAAGCACGACCTGCTGAGGCTGGCAAAGGAG
GAGGTGAGCTGGCAAGATCTGAGGCAGCGGGTGCGCACGGCACACAACGAGGTCATGGTC
ACCTTCCGCAAGATCATTGCTGCCCAGCAGAACAAGCGGACCCCCACCAAGAAAGAGAAG
GACCAGGCCTGGAAGACTCTAAAGGAGTATGAGAGCATCCTAAAGCTGCTGGACGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARAAAVADKKKGLMGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPRNQNKPFSVPHTK
.R....ADKKKG.MGPLT.LDTKDVD.LLKKSEAQ..QPEDG.PFGALTQ.LLQALVEENIISP.EDSPIPDMSGKE..ADG.S.SP.....P.SV.HT.
Retrocopy
SRRMGWADKKKGFMGPLTQLDTKDVDTLLKKSEAQ--QPEDGYPFGALTQSLLQALVEENIISPVEDSPIPDMSGKELWADGVSPSPAVRPSP-SVCHTP


Parental protein
SL--ESRIKEELIAQGLLESEERPAEDSEDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTK
S....SRIKEELIAQGLLESEERPAE.SEDEVL.EL...QAELKALSAHN.TKKHDLLRLAKEEVS.Q.LRQRVR.A.NEVM..FRKI.AA.Q.KRTPTK
Retrocopy
SAWRASRIKEELIAQGLLESEERPAEGSEDEVLVELCRQQAELKALSAHNHTKKHDLLRLAKEEVSWQDLRQRVRTAHNEVMVTFRKIIAAQQNKRTPTK


Parental protein
KEKDQAWKTLKERESILKLLDG
KEKDQAWKTLKE.ESILKLLDG
Retrocopy
KEKDQAWKTLKEYESILKLLDG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide