RetrogeneDB ID:
retro_ecab_602
Organism:
Horse ( Equus_caballus )
Location:
23:7754485-7755291 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
59.12 %
Coverage:
98.91 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_602
AATGAAACAGAAATAAGCGACCAACCCAACAAAGAGTTCAAACAAAAACTCATAAGGATG
CTCACAGATACTGGGAGAAGACTAGCTGAGCACAATGAGTTCATCAACAAAGAACTGGAA
AATATAAAAAAGAATCAATCAGAAATGAAGACTACAATACTGGAACTGAAAAATTCACTA
GAGGGACTCAATAGCAGAGTAGAGGATATAGAAGAACAGATCAGTGAGGTAGATGAAAGA
CTAGAGGAAATCACCCAAGCTGAATAGAAAAAAGATAATTAGACAGATTGAGAACAGTCT
AAGGGAACTCTGGGACAATATCAAGCACACTAACATTCATATTATATGTGTCCCAGAAGG
AGAAGAGAGAGACAAAAGGGCAGAAAATTTATTTGAAGAAATAATAGCTGAAAATTAACC
TAACCTAAGGAAGGAAACAGATATCCAAGTACAGGAAGCACAGAGAGCTCCAAAAAAGAT
AAGCCCAAAGAGGCCCACACCAAGACACATTATAATTAAAATGTCCAAAATAAAAGAGAA
TCCAAAAAGTGGCAAGAGAAAGGCAACAAGTGACAAACAAAGGAAAGCCCATAAGGCTAT
CAGCGGACTTCTCAGCCAAAACCCTACAGGCAAGAAGAGAATGGCATGATATACTTAAAA
TACTAAAAGGTAAAAACCTACAGCCAAGAATACTCTATCCATCAAGGTTGTCATTCAGAT
TGGCAGGAAAGATAAAGAGCTTCATAGACAAGCAAAAATTAAAGGAGTTTATCACCAAGA
AACCAGTTCTACAAGAAATGCTGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.44
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NEKEINNVTDEEYKLTVIRVLTNLGRRMDELSENFKKELEN-KKRTNQKKTTILEIKNSLEGLNGRVDDTEEWISELDERLEEITQA-SQIKETRIIKNT
NE.EI......E.K...IR.LT..GRR..E..E...KELEN.KK.....KTTILE.KNSLEGLN.RV.D.EE.ISE.DERLEEITQA....K..R.I.N.
Retrocopy
NETEISDQPNKEFKQKLIRMLTDTGRRLAEHNEFINKELENIKKNQSEMKTTILELKNSLEGLNSRVEDIEEQISEVDERLEEITQA\NRKKIIRQIENS


Parental protein
NMVKELWDNIKHNNIRLVGVPEGAERDKGAENLFEEVIAENFPNLRKETDWKTKKANRSPNFTNVKRPTPRHIVVKLAKVNDK-EKILRAARQNKITYKG
....ELWDNIKH.NI....VPEG.ERDK.AENLFEE.IAEN.PNLRKETD.....A.R.P.....KRPTPRHI..K..K......K..R...Q...T.KG
Retrocopy
--LRELWDNIKHTNIHIICVPEGEERDKRAENLFEEIIAEN*PNLRKETDIQVQEAQRAPKKISPKRPTPRHIIIKMSKIKEN\QKVARERQQ--VTNKG


Parental protein
TSIRLSENFSADTLQARREWNDIFRTLKDKNLQPRILYAVKISFKYDGEIKTFQDKQKLREFIATRPPLQEMLR
..IRLS..FSA.TLQARREW.DI...LK.KNLQPRILY....SF...G.IK.F.DKQKL.EFI...P.LQEML.
Retrocopy
KPIRLSADFSAKTLQARREWHDILKILKGKNLQPRILYPSRLSFRLAGKIKSFIDKQKLKEFITKKPVLQEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide