RetrogeneDB ID:
retro_ecab_603
Organism:
Horse ( Equus_caballus )
Location:
23:9686435-9687174 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.18 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
7


Parental gene:
Parental gene symbol:
RPS6
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]

Genomic region (view in browser)





>retro_ecab_603
CTGAACATCTCCTTCCCAGCAACTGGCTGCTAGGAACTCATTGCATTGGAGGATGAATGC
AAACTTCCTACCTTTATGAGAAGAGTATGGATGCAGAAGTTGCTGCTGATGCTCTGGGCG
AAGAATGGAAGGGTTGTGTGGTCCAGATCTGTGATGGGAATGACCAATAAGGTTTCCCCA
TGAAGCAGGCTGTCTGGACCCATGCCTGTGTCTGCTTGCTACTGAGTAAGAGGCACTCAC
TCCTGTTATAGCCCAAGGAGAACTGGAGAAAGGAAGCACAAATCTGGTTGAGGTGGCTTG
TGGATGCCACTCTGAGTGTTGTCAACATGGTTATTATGAAAAAAAGGGAGAAGGATATTC
CTGTACTGACTGATACTAATGTGCCTTGTTGCCAGGCGCCCCCAAAGAGCTGTCAGAATC
TGCAAATTTTCAGTCTCTCTAAAGAAGATGGTGTCTGCCAGTGTGTTGTGAGAAAGCTCC
TGAACAAAGAAGGGAGGAAAAGTAGGATCAAAGTGCTCAATATGCAGTGTCTTGTTACTC
CACGTATCCTGCAAGACAAACGTCAGTAAATTGCTTTGAAGAAAGTGCACTAAAGAAAAT
AAGGACAAGTCTGCAAATATGATCAACTGTGGCCAAGAGAATGAAGGAGGCCAAAGCAAA
ATGCCAGGAACAGATTGCCAAGAGGCAGAGGCTATCCTTTGTCAGAGCTTCTACCTCTAA
GTCTGAGTCCAGTCAAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNISFPATGCQKLIEVDDERKLRTF-YEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLS-KG-HSCYRPRRTGERKRKSVRG
LNISFPATGC..LI...DE.KL.TF.YEK.M..EVAADALGEEWKG.VV.I..GND..GFPMKQ.V.TH..V.LLLS..G.HSCY.PRRTGERK.KS..G
Retrocopy
LNISFPATGC*ELIALEDECKLPTF/YEKSMDAEVAADALGEEWKGCVVQICDGNDQ*GFPMKQAVWTHACVCLLLS\RGTHSCYSPRRTGERKHKSG*G


Parental protein
-CIVDANLSVLNLVIVKKGEAGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALK
...VDA.LSV.N.VI.KK....EKDIP.LTDT.VP....P.........F.LSKED.V.Q.VVRK.LNKEG.K.R.K....Q.LVTPR.LQ.KR..IALK
Retrocopy
/WLVDATLSVVNMVIMKKR---EKDIPVLTDTNVPCCQAPPKSCQNLQIFSLSKEDGVCQCVVRKLLNKEGRKSRIKVLNMQCLVTPRILQDKRQ*IALK


Parental protein
KQRTKKNKEEAAEYAKLLAKRMKEAKE-KRQEQIAKRRRLSSLRASTSKSESSQK
K....K.......Y..L........K..K.QEQIAKR.RLS..RASTSKSESSQK
Retrocopy
KVH*RK-*GQVCKYDQLWPRE*RRPKQ/KCQEQIAKRQRLSFVRASTSKSESSQK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide