RetrogeneDB ID:
retro_ecab_604
Organism:
Horse ( Equus_caballus )
Location:
23:16665858-16666466 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.62 %
Coverage:
100.0 %
Frameshifts:
5
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_604
GAGGTTGAAACTCTAAAGAAAAAACCAAACAGAAATTCTGGAGCTGAAGAACTCAATTAA
TGAGATGAAAAATGAATTAGAAAGACCAGAAATAGACAGACTACATGGAAGAGAGAATTA
TTGACCTCAAAGATAGAAACCTAGAAATAATACAGGTAGAAGAGGAGAGAGACTTAAGAT
TTTTTAAAAATGTAGAAATTCTGTAAGAATTATCCAATCCCATTAGAAAGGGTAACGTAA
AGATAATGAGTATTCCAGAAGGAGAAGTGAGACACAAGGGAGCAGAGAGCTTATTTAAAG
AAATAATAGCCTAGAACTTCCCCAACCTGAGGAAAGAATTGGATATAAAAATTCATGGAG
CTAATAGAACACACAATTATCTTAACACGAAAAGACCTCCTCCAAGACATGATAATAAAA
CTGCCAAAAGTCAATGACAAACAAAGAATATTAAAGGCATCCAGGGAGGGGGGGATAATA
ACTTACAAAGGAACTCCCATTAGGCTGCTGGCAGATTTCTCAGTAGGAACTATACAGGCC
AGGAGAGGGTGGATGATATATTCAAAATATTGAAAGATAAAAACAGTTAACAAAGAATAC
TCTATCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EINTIKK-NQSKTLEMKNTMDEVK-KNLGSVNNR-ADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAES
E..T.KK.NQ...LE.KN...E.K.K......NR..D..EE.I..L.DRN.EI.Q.EEER.LR...N.EIL.E.S..IRKGN.....IPEGE...KGAES
Retrocopy
EVETLKK\NQTEILELKNSINEMK/K*IRKTRNR/TDYMEERIIDLKDRNLEIIQVEEERDLRFFKNVEIL*ELSNPIRKGNVKIMSIPEGEVRHKGAES


Parental protein
LFKEIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHSPRH-IVEKLAKVNDKEKVLRAANKKQQIITYKGAPIRLSADFSTETLQARREW-SDIFKALKD
LFKEIIA.NFPNL.KEL.I....A.R..NY...KR..PRH.I...L.KVNDK...L..A.....IITYKG.PIRL.ADFS..T.QARR.W..DIFK.LKD
Retrocopy
LFKEIIA*NFPNLRKELDIKIHGANRTHNYLNTKRPPPRH\IIK-LPKVNDKQRILK-ASREGGIITYKGTPIRLLADFSVGTIQARRGW/DDIFKILKD


Parental protein
KNLQPRILYP
KN...RILYP
Retrocopy
KNS*QRILYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide