RetrogeneDB ID:
retro_ecab_605
Organism:
Horse ( Equus_caballus )
Location:
23:22602642-22603132 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.19 %
Coverage:
98.79 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_605
CCTGAGTTCAACCCCAGCGAAATCAAAGTCGTAAACCCGAGGTGCACCGGTGGGGAAGTC
AGTGCCACATCTGCCCTGGCTCCCAAGATTGGCCCCTGGGTCTGTCTCCAAAAAAAGTTA
GGTCATGACATTGCCAAGGCATGTGGTGACTGGAAGGATCTAAAGATTACGGTGAAACTG
ACCATTCAGCACAGACAAGTCAGATTGAGGTGGTACGTTCTGCCTCTGCCCTGGTCATCA
AAGCCCTCCAGGGACCACCCAGAGACAGAAAGAAGCAGAAAGACTTTGAGCACTTTTGTG
GAAATAGCACTTTTGATGGGATTGTCAACATTGCCGGACAGATGTGGCATTGATCTTTAG
TCAGAGAACTCTCTGGAACTGTTGAAGAGATCCTGAGGCTTGCGCAGTCTGTGGGCTGCA
GTGTTGATGGCCACCATCTCATGACATCATAGATGACATCAACAGTGGTGCAGTGGAATG
CCCAGCCAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PKFDPNEIKVVYLRCTGGEVGATSALAPKIGP-LGLSPKKV-GDDIAKATGDWKGLRITVKLTIQNRQ-AQIEVVPSASALIIKALKEPPRDRKKQKNIK
P.F.P.EIKVV..RCTGGEV.ATSALAPKIGP.LGLSPKKV.G.DIAKA.GDWK.L.ITVKLTIQ.RQ..QIEVV.SASAL.IKAL..PPRDRKKQK...
Retrocopy
PEFNPSEIKVVNPRCTGGEVSATSALAPKIGP/LGLSPKKV\GHDIAKACGDWKDLKITVKLTIQHRQ/SQIEVVRSASALVIKALQGPPRDRKKQKDFE


Parental protein
H-SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRH-PHDVIDDINNGAVECPAS
H..GN.TFD.IVNIA.QM.H.SL.RELSGT..EIL..AQSVGC.VDG.H..HD.IDDIN.GAVECPAS
Retrocopy
HFCGNSTFDGIVNIAGQMWH*SLVRELSGTVEEILRLAQSVGCSVDGHH/SHDIIDDINSGAVECPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide