RetrogeneDB ID:
retro_ecab_606
Organism:
Horse ( Equus_caballus )
Location:
23:31646049-31646255 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.71 %
Coverage:
90.79 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
PET100
Parental gene aliases:
No gene alias available
Parental gene description:
PET100 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:40038]

Genomic region (view in browser)





>retro_ecab_606
TTTCAGATAATGCTGTAACTCATCTTCCCTGTGGCCATGTTCTGGATTGCTAACCAGGCT
GAGTGGTTTGAGGACTAGTTACACCGCACAAGAGGGAGCTGTGGCCACCTAAGAAGGCGG
CCTAGTCTCAGGAGCTAGAAGACTTCAAAGAGAGGAGACAGAGGCAGCAGGAGCAGAAGC
TCCTTCAAGCTGCCCGGTAGAACTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FRMTLYLTFPVAMFWIANQAEWFED-YVIQRKRELWPPEKEDQRQELEEFKERIRKQREEKLLRAARQSS
F...L.L.FPVAMFWIANQAEWFED..V...KRELWPP.K....QELE.FKER...Q.E.KLL.AAR..S
Retrocopy
FQIML*LIFPVAMFWIANQAEWFED/LVTPHKRELWPPKKAA*SQELEDFKERRQRQQEQKLLQAAR*NS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide