RetrogeneDB ID:
retro_ecab_612
Organism:
Horse ( Equus_caballus )
Location:
23:7444249-7444893 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.74 %
Coverage:
80.22 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
DUSP5
Parental gene aliases:
No gene alias available
Parental gene description:
dual specificity phosphatase 5 [Source:HGNC Symbol;Acc:3071]

Genomic region (view in browser)





>retro_ecab_612
CTGTGTCAGCCAGCAGCAGCCCTGTGGGTCTACTTGCTCCAAGGGGGGTATGAGACCTTT
TACTCAGAAGCTCCTGAGTGTTGTGTGAATTTAAAACCCATTTCACAAGAGGAGGTTGAA
ATGAAAAAGCCCTCATTAACCAGTGTGGGAAACCAGCACTTGACACCAGCTACAAGCTGA
CTTCTGAGCAGGGTGGCCCAGTTGCAATCCTTCTATGCCTCAACTTTGGAAGTGCCCACT
GTGCATCCAAGTGCAAAATCCACACCAGCCTGAACATCATGGTCCTGCTGAATGTCTCTC
AGCAGCCCTCCAAGGTCTGTGTGGCCCACCTGCAATACTAATGGACCCCTGTGGAAGACA
GCCACGTGATTGACGTTAACTCCCACTTTCGAGAAGCAATAGACTTCATTGACTGTTTAG
GGGGAAGGGAGCAAAATCCTGGTCCTCTGTGAGACTTGGATCTCCTGTTTACACTCCATC
TGCAAGGATTATCTCATGAAGACCAAGCAGGTGGCCTGAAGGACGCCTTGGACTGCATCG
AGCAGAAGAATATGATCTCACCCAACTTTGGCTTCATGGACCAACTTCTGCAGTATGAAT
CTGACATGTTCCACATCCACCCCAAGGCTCCCTTCTGCCAAGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LCLPARRPAVYFLKGGYETFYSEYPECCVDVKPISQEKIE-TERALISQCGKPVLNISYRPVYDQGGPVEILPFLYLGSAYHASECEFLANLHITALLNV
LC.PA....VY.L.GGYETFYSE.PECCV..KPISQE..E..E.ALI.QCGKP.L..SY.....QGGPV.IL..L..GSA..AS.C.....L.I..LLNV
Retrocopy
LCQPAAALWVYLLQGGYETFYSEAPECCVNLKPISQEEVE/NEKALINQCGKPALDTSYKLTSEQGGPVAILLCLNFGSAHCASKCKIHTSLNIMVLLNV


Parental protein
SRRASEACTTRLHYKWIPVEDSHTADISSHFQEAIDFIDCV-REKG-GKVLVHCEAGISRSPTICMAYLMKTKQFR-LKDAFDYIKQRRSVISPNFGFMG
S...S..C...L.Y.W.PVEDSH..D..SHF.EAIDFIDC..R.KG..K.LV.CE..IS....IC..YLMKTKQ...LKDA.D.I.Q....ISPNFGFM.
Retrocopy
SQQPSKVCVAHLQY*WTPVEDSHVIDVNSHFREAIDFIDCL/RGKG/SKILVLCETWISCLHSICKDYLMKTKQVA/LKDALDCIEQ-KNMISPNFGFMD


Parental protein
QLLQYESEILPSTPTPQAPSCQG
QLLQYES......P...AP.CQG
Retrocopy
QLLQYESDMFHIHP--KAPFCQG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide