RetrogeneDB ID:
retro_ecab_613
Organism:
Horse ( Equus_caballus )
Location:
23:14514641-14515155 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.52 %
Coverage:
56.11 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
RFC5
Parental gene aliases:
No gene alias available
Parental gene description:
replication factor C (activator 1) 5, 36.5kDa [Source:HGNC Symbol;Acc:9973]

Genomic region (view in browser)





>retro_ecab_613
ATAGATATCATTCAGAGACCAATTCTGAGCTTTGCCAGTTCAGGACAATGTTTGAGAAAG
ACTTAAAATTAGAAAGTAACGCCATGACTCAAGATACTCAGAATGCCTGAAGAAGAGTGA
TTGGAAATTTATGAAAAATACCATATTTTGCCTCATCTGTACTATCTGTCGAAGATCATC
CTTGCATTGCAGTCCTGGTGAATGAGGTTTGAAGTTAGTCCTTCACCCCAGAACTCATTG
TTGCCTATGAAAGACATACCATGGAAGAAGGGAAAGTCGACACAAATGAAGATGGATTGA
AAGCACTTGTAATTCCCTCCGGTGGAGCTATCTGAAGGGCTCTGAAGGTCTTGCAGAGCA
CCAAATGGTTTCTGGGACAGGTCAGACTGTAAACATGTATATGGAACATCCTTTCAAGTC
TAATTTCACCAACATTCTGGGCTGGATATTGAATCAAGACCTCTTCACGGCCTATAGAAA
TATTATGGAGTTGAAAACTTTGAAGAGGGTGGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IDIVRGPILSFAST-RTIFKKGFKLVILDEADAMTQDAQNALRRVIE-KFTENTRFCLICN-YLSKIIPALQSRCTRFRFGP-LTPELMVPRLQHVVEEE
IDI...PILSFAS..RT.F.K..KL....E..AMTQD.QNA.RRVI..KF..NT.FCLIC..YLSKII.ALQS...RF...P..TPEL.V....H..EE.
Retrocopy
IDIIQRPILSFASS/RTMFEKDLKL----ESNAMTQDTQNA*RRVIG/KFMKNTIFCLICT/YLSKIILALQSW*MRFEVSP/FTPELIVAYERHTMEEG


Parental protein
KVAISEDGMKALVTLSSGDMRRALNI-LQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
KV...EDG.KALV..S.G...RAL...L....M..G..T..TV.....HP.KS...NIL.W.LNQD..TAYRNI.ELKTLK..A
Retrocopy
KVDTNEDGLKALVIPSGGAI*RALKV/LAEHQMVSG--TGQTVNMYMEHPFKSNFTNILGWILNQDLFTAYRNIMELKTLKRVA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide