RetrogeneDB ID:
retro_ecab_614
Organism:
Horse ( Equus_caballus )
Location:
23:14652504-14653287 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
72.08 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1
Parental gene:
Parental gene symbol:
RPS4
Parental gene aliases:
No gene alias available
Parental gene description:
40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]
Genomic region (view in browser)
>retro_ecab_614
GCTCATGGTCCCAAGAAGCATCTGAAGTGTACAGCAGCTCCAAAGCACTGGATGCTGGAT
AAACTGATCTGTGTGTTTGTTCCTTGTCCATCAACTGGTCCCTATAAGCGGAGAGAATGC
CTCTCCCTCATCTTTTTTTAAAGAACAGACTTAAGTATGCCCCGGCAGGAAAGAAGTAAG
GAAGATCTTCATGCAGCAGTTCTTTAAGATTGATGGCAAGGTCCAAACCGATACAGCCTA
CCCTGATGGTTTTAAGGACGTCATCAGCATTGACAAGACGAGGGAGACTTTCTGTCTGAT
CCACGACACCAAGTGTTGCTTTGCTGTTCATTGTATTATACCTGAGGAGGCCAAGAACAA
GTTGCGCAAAGTGAGAAAGATCTTTATGGGCACAAAAGGAATTCCTCATCTGATGACCGA
GGATGCTCACGCATTCCACTACCCGGATCCCCTCGTCAAAGTGAACGATGCCTTTCAGAT
CGATTTGGAGACTGGCAAGATTAGCAAGTTCATCAGGTCTGACACTGGTGACCTGTGTAT
GGTGAGCAGAGGTGCTAAGCTGGGAAGAATTGGTGCGATCACCAACAGTGAGAGACATCT
TGGTTCTTTTGATGTGGTCCATGTGAAAGACGCCAACGGCAACAGCTTTGCCACTTGGCT
CTCCAACATTTTCATTACTGCAAAGACAGCAAACGACGGCTTTCTCTTCCCTGAGGAAAA
CATTATCGTCTCACCATTGCTGAAGAGAGACACGAGAGACTGCCAGGCAAACAGAGCAGT
GGG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.14 |
| SRP021940_placental_villous | 0.18 |
| SRP021940_synovial_membrane | 0.1 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
