RetrogeneDB ID:
retro_ecab_615
Organism:
Horse ( Equus_caballus )
Location:
23:18005246-18005913 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.56 %
Coverage:
99.55 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_615
GAAATGAAGAATACAATACTGGAAATGAAAAATTCACTAGAGGGACTCAATAGCAGAGTA
GATGATACAGAAGAATGGATTAGTGAGCTGGATGAAAGAGTAGAGGAAATCACCCAAGCT
GAACAGATAAAAGAAAAAAGAATTAGACATAATGAGAACAATCTAAGGGAACTCTGAGAC
AATATCAAGTGCACTAACATTCATATAATAGGTGTCCCAGGAGAAGAGAGGGGAAGAGAA
TCTATTTGAAGAAATAATAGCTGAAAACTTTCCTAATCTAAGGAAGGAAACAGACATTCA
AGTACAGGAAGCACAGAGAGCACCAAACAAGATGAACACCAAGAGGCCCACACGAAGACA
CATTATAATTAAAATACCCAAAATTAAAGATAAAGAGAGAATCCTAAAAGCAGCAAGAGA
AAGGCAACAAGTGACAGACAAAGGAAAGCCCATAAGGCTATCAGTGGACTTCTCAGCCGA
AACCCTACAGGCTAGAAGAGAGTGGCATGACATATTTAACGTGCTGAAGGGAAAAAACCA
ACAGCCGAGAATACTCTATCCAACATGGTTATTCAGAATGGAAGGAGACATAAAGAACTT
CCTAGACAAGCAAAAATTAAAGGAGTTTATCACCAAGAAACCAGTTCTACAAGAAATGCT
GAAAGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVKSAITEKKSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEKRIRQNENSLRELWDNIKCANIHVIGVPEERQRGRK-LFEEIIAEIFPNLRKETD
E.K..I.E.K.SL.G.NSR....EE.I..LD...EEIT.AEQ..EKRIR.NEN.LREL.DNIKC.NIH.IGVP.E..RGR..LFEEIIAE.FPNLRKETD
Retrocopy
EMKNTILEMKNSLEGLNSRVDDTEEWISELDERVEEITQAEQIKEKRIRHNENNLREL*DNIKCTNIHIIGVPGE-ERGRE\LFEEIIAENFPNLRKETD


Parental protein
TQVQEAQRVPNKTSPKRPTSRHIIIKMSKIKDKERILKAARERQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKV-KEKNLQPRILYPARLSFTMEGEI
.QVQEAQR.PNK...KRPT.RHIIIK..KIKDKERILKAARERQQVT.KGKPIRLSVDFSA.TLQ.RREWHDIF.V.K.KN.QPRILYP..L.F.MEG.I
Retrocopy
IQVQEAQRAPNKMNTKRPTRRHIIIKIPKIKDKERILKAARERQQVTDKGKPIRLSVDFSAETLQARREWHDIFNVLKGKNQQPRILYPTWL-FRMEGDI


Parental protein
KSFQDKQKLKEFITKKPILQEMLKG
K.F.DKQKLKEFITKKP.LQEMLKG
Retrocopy
KNFLDKQKLKEFITKKPVLQEMLKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide