RetrogeneDB ID:
retro_ecab_617
Organism:
Horse ( Equus_caballus )
Location:
23:28670032-28670673 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
82.95 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2
Parental gene:
Parental gene symbol:
PPIB
Parental gene aliases:
No gene alias available
Parental gene description:
peptidyl-prolyl cis-trans isomerase B [Source:RefSeq peptide;Acc:NP_001093231]
Genomic region (view in browser)
>retro_ecab_617
ATGCCGCATTTCTCAGAGCCGAATATGAAGGTGTTCTTTGCTGCCGCCCTTATCAAGGGC
TCAGTCTTTTTCCTGCTGTTGTCAGGACCCTCCACGGCTGATGAGAAGGGACCCAAAGTC
ACTGTCAAGGTGTGCATTGATCTGAGAATTGGAGGTAAAGATCAGGCTGGATGGTCATTG
GTCTCTTTGGAAAGACTCTTCCAAAAACCCTGGATAATTTTGTGGCCTTAGCCACAAGAT
AGAAAGGATTTGGGTACAAAGACAGCAAATTCCATCATGTGAGCAAGGACGTCACGATCC
AGGGTGGAGACTTCACCCGGGGAGATGGCACTGGAGGTAAGAGCATCTAAGGTGAAGGCT
TCTTGGATGAGAACTTCAAGCTGAAACACTATGGGCCCGGCTGGGTAAGCATGGCCAACA
CAGGCAAAGACTCCAACGGCTCCCAAGTCTTTATCACGACAGTCAAGACAGCCTGGCTAG
ATGGCAAGCACATCGTGTTCGGCAAAGTTCTTCAGGGCATGGAGGTAGTGCGGAAGGTGG
CGAGAGCCAAGACAGATGGTCAGGACAAGCCCCTGAAGGATGTGACAATCGCAGACTGCG
GCAAGATCCAGGTGGAGAAGCCCTTTGCCATCGCCAAGGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
