RetrogeneDB ID:
retro_ecab_618
Organism:
Horse ( Equus_caballus )
Location:
23:28823260-28823683 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.11 %
Coverage:
56.52 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
C1orf43
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876]

Genomic region (view in browser)





>retro_ecab_618
GGAAGACAATGCCCCAAATTCCTGAAGGAGGAAATTGACACTCAACTCTCCAGGAAACAG
GATGTCAAGCATTAACCCGAGCTCTTGCAGATTAAGACGGCAGTTTGCTCCAGCGGGAGA
CCCAGGGAAATCAATACTGCAAAAATTACCTCTACAGCACAAAAACACTGGCCAGCAAAA
GTGCCTTTGAGATCCCACTTCATGCTGTAGATCAGCAGCTCCATTTCCTAATGAGCGAGC
ATTTCAGCTCCTACTTAGATCTCTGAAACACTTGTATCCTTTCAAAAGAGCCTGCAAGGC
CCTCCTTGATATCCTGCTAGATGGCTATGAATCAGCCTGCTCTGGGAAGGAGTCTGTGTC
CAGAGTGAGCACTTGTTCTTTCAGGAAGCAGAGTGTGAGTTGACTGAGACAATCGAGGCA
CAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GHNAPKDLKEEIDIRLSRVQDIKYEPQLL-ADDDARLLQLETQGNQNCYNYLYRMKALDAIRASEIPFHADGRHPCSLMGKNFRSYLLDLRNSST-PFKG
G...PK.LKEEID..LSR.QD.K..P.LL.AD.D..LLQ.ETQGNQ.C.NYLY..K.L....A.EIP.HA.......LM...F.SY.LDL.N....PFK.
Retrocopy
GRQCPKFLKEEIDTQLSRKQDVKH*PELL/AD*DGSLLQRETQGNQYCKNYLYSTKTLASKSAFEIPLHAVDQQLHFLMSEHFSSY-LDL*NTCI/PFKR


Parental protein
VRKALIDTLLDGYETARYG-TGVFGQSEYLRYQEALSELATVVKAR
..KAL.D.LLDGYE.A..G..GV..QSE.L..QEA..EL.....A.
Retrocopy
ACKALLDILLDGYESACSG/EGVCVQSEHLFFQEAECELTETIEAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide