RetrogeneDB ID:
retro_ecab_620
Organism:
Horse ( Equus_caballus )
Location:
23:37322813-37323258 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.55 %
Coverage:
80.54 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_620
AAAATGGTTCGCTATTCATTTGACTCAGAAAATGCCACGAAATCATGCAAATCAAGAGGT
TCAAATCTTCATACTTACTTTAAGAACACTCGTGAAACTGCCCAGGCCATGGAGAGCATT
CATATCCCGAAAGCCACCAAGTGTCTGAAAGAGTCACTTTACAGAAGCAATGTGTACCAT
TCCATTATTACAGGGCTGGAGTTGGTAGGTGTGCCCAGGCCAAACAGTAGGGCCAGACAC
AAGTTCCATGACCCAGTAAGAATCCTGAATTTTTGCTCTACAGGCTTAAAAATGCAGAAA
GCAATGCTGAATGTAAGGATTTTGATGTAGAGATTCTGGTCATTGAGCATACCCAGGAGA
ACAAAACCTCCAAAGAGGGCCCCGGACTTACAGAGCTCATAGTTGGATCATCCCTGCCAT
GAGCTTGCCCTGCCACACTGACATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 2.29
SRP021940_embryo 0.07
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKD-VTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA
KMVRYS.D.EN.TKSCKSRGSNL...FKNTRETAQA....HI.KATK.LK..VTL.KQCVPF..Y..GVGRCAQAKQ.G.TQ...P.K..EFLL..LKNA
Retrocopy
KMVRYSFDSENATKSCKSRGSNLHTYFKNTRETAQAMESIHIPKATKCLKE/VTLQKQCVPFHYYRAGVGRCAQAKQ*GQTQVP*PSKNPEFLLYRLKNA


Parental protein
ESNAELKGLDVDSLVIEHIQVNKAPK-MRRRTYRAHGRINPYMSSPCHIEM
ESNAE.K..DV..LVIEH.Q.NK..K....RTYRAH..I.P.MS.PCH..M
Retrocopy
ESNAECKDFDVEILVIEHTQENKTSK/RGPRTYRAHSWIIPAMSLPCHTDM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide