RetrogeneDB ID:
retro_ecab_622
Organism:
Horse ( Equus_caballus )
Location:
23:40217664-40219548 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
91.41 %
Coverage:
96.03 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
KLHL13
Parental gene aliases:
No gene alias available
Parental gene description:
kelch-like family member 13 [Source:HGNC Symbol;Acc:22931]
Genomic region (view in browser)
>retro_ecab_622
CCCCTGCCTCCGGCGTACGTCTTTGTGCAAGAGGAAAGCTTTCACATGAAAGTGTCTCTT
GGTAACGGCGATATGGGCGTCTCTGCCCATTTGCAGCCTTGCAAAGCAGGAACCACACGT
TTCTTTACCAGCAATACTCACAGTTCGGTGGTGTTGCAAGGCTTTGATCAGCTTAGAATA
GAAGGATTGCTTTGTGATGTGACTCTGGTCCCGGGTGATGGAGATGAAATCTTCCCTGTT
CACAGAGCTATGATGGCATCTGCTAGTGATTATTTCAAGGCTATGTTCACAGGGGGAATG
AAAGAACAAGATTTAATGTGCATTAAGCTTCATGGAGTGAACAAGGTTGGTCTGAAGAAA
ATAATTGATTTTATTTATACTGCAAAACTTTCTCTTAATATGGACAATCTTCAGGACACA
CTTGAAGCTGCCAGCTTTTTACAAATTTTACCTGTTTTGGATTTCTGTAAAGTGTTTCTT
ATTTCAGGAGTCTCTTTAGATAACTGTGTTGAAGTTGGGCGAATTGCTAACACCTATAAT
CTCATAGAAGTGGATAAATATGTCAATAATTTCATCCTGAAGAATTTTCCTGCGTTATTG
AGTACTGGGGAGTTTCTAAAACTCCCTTTTGAACGGCTCGCCTTTGTGCTTTCCAGCAAT
AGTCTTAAGCACTGTACCGAACTCGAGCTGTTCAAGGCTGCCTGTCGCTGGCTAAGGTTG
GAAGACCCTCGGATGGAATGTGCTGCAAAATTAATGAAGAATATTCGATTTCCACTGATG
ACACCACAGGACCTCATCAATTATGTGCAGACAGTAGATTTCATGAGAACAGACAATACC
TGTGTGAATTTGCTTTTGGAAGCCAGCAATTACCAAATGATGCCGTATATGCAACCAGTG
ATGCAGTCAGATAGAACTGCCATTCGATCTGACTCAACGCACTTGGTTACATTAGGAGGA
GTTTTGAGGCAGCAGCTGGTTGTCAGTAAAGAATTACGGATGTATGATGAAAGGGCACAA
GAGTGGAGATCTTTAGCCCCCATGGATGCTCCTCGTTACCAGCATGGCATTGCTGTCATT
GGAAACTTTCTTTATGTAGTTGGTGGTCAAAGTAATTACGATACGAAAGGAAAAACTGCC
GTCGATACAGTTTTCAGATTTGATCCTCGGTATAATAAATGGATGCAGGTTGCATCATTA
AATGAAAAGCGCACATTCTTCCACTTGAGTGCCCTCAAAGGACATTTGTATGCTGTTGGT
GGGCGAAGTGCAGCTGGTGAACTGGCTACAGTAGAATGTTACAACCCAAGAATGAATGAG
TGGAGTTATGTCGCAAAAATGTGCGAACCCCACTATGGCCATGCTGGAACAGTGTATGGA
GGCTTAATGTATATTTCAGGAGGAATTACTCACGACACTTTCCAAAACGAGCTCATGTGT
TTTGACCCAGATACAGACAAATGGACACAAAAGGCTCCAATGACTACAGTCAGAGGTCTG
CATTGCATGTGTACAGTTGGAGACAAGCTCTATGTCATTGGTGGCAATCACTTCAGAGGA
ACAAGTGATTATGATGATGTTCTAAGCTGTGAATACTATTCGCCGACCCTTGACCAGTGG
ACACCAATTGCTGCTATGTTAAGAGGTCAAAGTGATGTTGGAGTTGCTGTCTTTGAAAAT
AAAATCTATGTTGTAGGTGGATATTCTTGGAATAATCGTTGTATGGTTGAAATTGTCCAG
AAATATGACCCAGAAAAGGATGAGTGGCATAAAGTTTTTGACCTTCCAGAGTCACTTGGT
GGCATTCGAGCTTGTACTCTCACAGTTTTTCCACCTGAAGAAAACCCTGGGTCACCTTCT
AGAGAGTCACCTCTTTCAGCACCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 22.94 |
| SRP021940_cerebellum | 39.88 |
| SRP021940_embryo | 49.35 |
| SRP021940_placental_villous | 19.72 |
| SRP021940_synovial_membrane | 22.01 |
| SRP021940_testis | 9.26 |
Parental protein coverage
Changes in the retrocopy sequence
