RetrogeneDB ID:
retro_ecab_623
Organism:
Horse ( Equus_caballus )
Location:
23:46266288-46266626 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.54 %
Coverage:
54.03 %
Frameshifts:
4
Stop codons:
4


Parental gene:
Parental gene symbol:
CLDN1
Parental gene aliases:
No gene alias available
Parental gene description:
claudin 1 [Source:HGNC Symbol;Acc:2032]

Genomic region (view in browser)





>retro_ecab_623
GCCACCATTGCCATGAAAAGTCTAAAGTGCTTGGAGGATGCTGAGATGTAGAAGAGGTGA
ATGGCTATCATTGGAGTTTTGTTTTTATTGTTGTAGATCTGGCTATTTTAGTTGCCACAG
CATAGTAAGACGATAAAATTGTGCAAGAGGTTTATCAGTCAATGACCCCAGTCAATGCCA
GGGATGAATGGGTCAAGCTCTCTTTAATGTCTTGGCTACTGCTCTCACTGCCTTCTGAGA
AGTGCCCTATTTTGCTTTCCTGACTCCCCCAAAAGACCTCTTACCTAACACCACTGCCCT
ATCCTAAACCCATACCTTCTAATGGAAAGTACCACATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ATVGMKCMKCMEDDEVQKMRMAVIG-GVIFLFAGLAVLVATAWYGNRIVQEFYDPMTPVNARYEF-GHALFTGWAAA-SLCLLGGGLLCCSCPRK-TTSY
AT..MK..KC.ED.E..K..MA.IG....F....LA.LVATA.....IVQE.Y..MTPVNAR.E..G.ALF...A.A.S.CLL...L.C.....K..TSY
Retrocopy
ATIAMKSLKCLEDAEM*KR*MAIIG/SFVFIVVDLAILVATA**DDKIVQEVYQSMTPVNARDEW/GQALFNVLATA/SHCLLRSALFCFPDSPK/KTSY


Parental protein
PTPRPYPKPAPSSGKDYV
.TP.PYPKP.PS.GK...
Retrocopy
LTPLPYPKPIPSNGKYHI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide