RetrogeneDB ID:
retro_ecab_626
Organism:
Horse ( Equus_caballus )
Location:
24:2080262-2080885 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.42 %
Coverage:
79.92 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_626
TCTCAAGGAACCAAAATTGCATTTAATGGCCTCAAGGGTCATGTTTTTAAAGAGAGGCTT
GTCGCTCTGCAGAACGATGAAGCTTCATTTAGAAAATCCAAGCTAATTACTGAGGATATT
GAGGGAAAAACTGCCTGACCAACTTTCATGACATGGATCTTACCCATGAAAATATGTGCT
CCATGGTCAAAAAACAATGGCAGACCACTACTGAAGCTAAGGTTGATGTTAAGACTACCA
ATTGTTTTTTGCTTCATCTCTTCTCTGTTGGTTTTACTAAAAAAAGCAACAATCAGATTT
GGAAGATCTCTTACACTCAGCACCTACAGGTGCATCAAATCTGATAGAAGATGATGGAAA
TCATGGCCAAGGAGGAGCAGACAAACAACTTGACAGAATTGATTCCAGACAGCATTGGGA
AAGACATAGAAAAGGCTTGCCAATCTGTTTATCCTCACTATGATGTGTTCACTAGAAAAG
CAAAAATGCTGAAGAAGCCCGAGTTTGAACTGGGAAAACACATGAAGCTTCAAGGTACAG
GCAACAGTTCTGGAAAAGCTCCTGGACATGAGACAGGTGATAAAGTTGAATGAGCTAGTG
GATATGAGACACCAGTCCAAGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGK-NCLTNFHGMDLTRDKMCSMVKK-WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ
.QGTKIA..GLKG.VF...L..LQNDE..FRK.KLITED..GK.NCLTNFH.MDLT...MCSMVKK.WQT..EA.VDVKTT...LL.LF.VGFTKK.NNQ
Retrocopy
SQGTKIAFNGLKGHVFKERLVALQNDEASFRKSKLITEDIEGK/NCLTNFHDMDLTHENMCSMVKKQWQTTTEAKVDVKTTNCFLLHLFSVGFTKKSNNQ


Parental protein
IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK
I.K.SY.QH.QV.QI..KMMEIM..E.QTN.L.E....LIPDSIGKDIEKACQS.YP..DVF.RK.KMLKKP.FELGK.M.L.G.G.SSGKA.G.ETG.K
Retrocopy
IWKISYTQHLQVHQI**KMMEIMAKEEQTNNLTE----LIPDSIGKDIEKACQSVYPHYDVFTRKAKMLKKPEFELGKHMKLQGTGNSSGKAPGHETGDK


Parental protein
VERADGYEPPVQE
VE.A.GYE.PVQ.
Retrocopy
VE*ASGYETPVQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide