RetrogeneDB ID:
retro_ecab_628
Organism:
Horse ( Equus_caballus )
Location:
24:11343111-11344650 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
86.8 %
Coverage:
79.29 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
HSPA8
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:A2Q0Z1]
Genomic region (view in browser)
>retro_ecab_628
CCCGAGGAGATCTCCTCCATGGTCCTCACTAAGATGAAGGAGATCGCCGAAGCCTACCTG
GGGGGCAAAGTGCAGAGCGCGGTCATCACCGTCCCGGCCTATTTCAACGACTCGCAGCGC
CAGGCCACCAAGGACGCGGGCACCATCACCGGCCTCAACGTGCTGCGCATCATCAACGAG
CCCACGGCGGCGGCCATCGCCTACGGCCTGGACAAGAAGGGCTGCACGGGCGGCGAGAAG
AACGTGCTCATCTTTGACCTGGGCGGCGGCACCTTCGACGTGTCCATCCTGACCATCGAG
GACGGCATCTTCGAGGTGAAGTCCACGGCCGGCGACACCCACCTGGGCGGCGAGGACTTT
GACAACCGCATGGTGAGCCATCTGGCGGAGGAGTTCAAGCGCAAGCACAAGAAGGACATC
GCGCCCAACAAGCGCGCGGTGCGGCGGCTGCGCACGGCCTGCGAGCGCGCCAAGCGCACC
CTGAGCTCGTCCACGCAGGCGAGCATCGAGATCGACTCGCTCTACGAGGGCGTGGACTTC
TACACGTCCATCACCCGCGCCCGCTTCGAGGAGCTCAACGCCGACCTGTTCCGCGGGACC
CTGGAGCCGGTGGAGAAGGCGCTGCGCGACGCCAAGCTGGACAAGGGCCAGATCCAGGAG
ATCGTGCTGGTGGGCGGCTCTACCCGCATCCCCAAGATTCAGAAGCTGCTGCAGGATTTC
TTCAATGGCAAGGAGCTGAACAAGAGCATCAACCCCGACGAGGCGGTGGCCTACGGAGCC
GCGGTACAGGCAGCCATCCTCATCGGGGACAAGTCAGAGAACGTGCAGGACCTGCTGCTA
CTCGACGTGACCCCGTTGTCCCTGGGCATCGAGACGGCTGGCGGCGTCATGACCCCACTC
ATCAAGAGGAACACCACGATCCCCACCAAGCAGACGCAGACCTTCACCACTTACTCAGAC
AACCAGAGCAGCGTGCTGGTGCAGGTGTACGAGGGCGAACGGGCCATGACCAAGGACAAT
AACCTGCTGGGCAAGTTCGACCTGACCGGGATTCCCCCGGCGCCCCGCGGCGTCCCCCAG
ATCGAGGTCACCTTCGACATCGACGCCAACGGCATCCTCAACGTCACCGCCGCCGACAAG
AGCACCGGTAAAGAAAACAAAATCACCATCACCAACGATAAGGGTCGTCTGAGCAAGGAC
GACATTGACCGGATGGTGCAGGAGGCGGAGCGGTACAAGTCGGAAGATGAGGCCAATCGC
GACCGGGTCGCGGCCAAAAACGCCGTGGAGTCCTATACCTACAACATCAAGCAGACGGTG
GAAGACGAGAAACTGAGGGGCAAGATTAGCGACCAGGACAAAAACAAGATCCTCGACAAG
TGTCAGGAGGTGATCAACTGGCTCGACCGAAACCAGATGGCAGAGAAAGATGAGTATGAA
CACAAGCAGAAAGAGCTTGAAAGAGTGTGCAACCCCATCATCAGCAAACTTTACCAAGGC
GGCCCTGGCGGCGGCGGCGGTTCTGGAGCCTCCGGGGGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 113.88 |
| SRP021940_cerebellum | 157.82 |
| SRP021940_embryo | 19.64 |
| SRP021940_placental_villous | 107.05 |
| SRP021940_synovial_membrane | 11.2 |
| SRP021940_testis | 1268.43 |
Parental protein coverage
Changes in the retrocopy sequence
