RetrogeneDB ID:
retro_ecab_629
Organism:
Horse ( Equus_caballus )
Location:
24:32037077-32037375 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.69 %
Coverage:
80.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
LAMTOR2
Parental gene aliases:
No gene alias available
Parental gene description:
late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [Source:HGNC Symbol;Acc:29796]

Genomic region (view in browser)





>retro_ecab_629
CTGACTAATGAGGGAACTCTGCTGCCCTGACCAGGTAACAGGATATAGATGCCCCGGTCA
CCACAGCCATCACCAGTAACATCTGGGCCACCTAGAACCAGAACAGGAACCAAGCGTTGA
ATGAAGACAATCTCAAATTCATCCTCACGGACTGCACGAAGGGCGGTGCAGCCATCACCT
GGGTGGCCAGCCTTCTGCTGTGTATGCGTGCCAAGGAGACATGGGCTTCCGAATCTTCAA
GGCCAAGGCCCAGGCCTTGGAACAGTGGCTGGAGGAGCCTCTCGCCCAAGTAGTAGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNNEGSLLAYSGYG-DTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKET-VGFGMLKAKAQALVQYLEEPLTQV
L.NEG.LL...G...D.DA.VT.AI.SNIWA....N.NQA.NEDNLKFIL.DC..G..AIT.VA.LLLCM.AKET..GF...KAKAQAL.Q.LEEPL.QV
Retrocopy
LTNEGTLLP*PGNR/DIDAPVTTAITSNIWAT*NQNRNQALNEDNLKFILTDCTKGGAAITWVASLLLCMRAKET/MGFRIFKAKAQALEQWLEEPLAQV


Parental protein
AA
.A
Retrocopy
VA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide