RetrogeneDB ID:
retro_ecab_63
Organism:
Horse ( Equus_caballus )
Location:
22:18582682-18583030 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.09 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL30
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]

Genomic region (view in browser)





>retro_ecab_63
ATGGCGGCCACAAAGAAGATGAAAAAATTGTTGGAGTCGGTCAACTCTAGGCTCCAACTC
ATTATGAAAAGTGGAAAGTATGTGCTGGGGTACAAGCAGACTCTGAAAATGATCAGACAA
GGCAAAGTGAAACTGGTCATCCTCACCAACCAGTGCCCAGCCTTGAGGAAATCTGAAATA
GAGTACTATGCCGTTTTGGCCAAAACTGGTGTCCATTACTACAGTGACAATAATACTGAA
TTGGGCACAGCATGTGGAAAATACTACAGAGTGTGCACACTGGCTATGATTGATCTAGGT
GATTCTGATATCATTAGAAGCTTGCCAGAACAGACTGGTGAAAAGCAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.29
SRP021940_cerebellum 0.05
SRP021940_embryo 0.17
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.26
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG
M.A.KK.KK.LES.NSRLQL.MKSGKYVLGYKQTLKMIRQGK.KLVIL.N.CPALRKSEIEYYA.LAKTGVH.YS.NN.ELGTACGKYYRVCTLA.ID.G
Retrocopy
MAATKKMKKLLESVNSRLQLIMKSGKYVLGYKQTLKMIRQGKVKLVILTNQCPALRKSEIEYYAVLAKTGVHYYSDNNTELGTACGKYYRVCTLAMIDLG


Parental protein
DSDIIRSMPEQTGEK
DSDIIRS.PEQTGEK
Retrocopy
DSDIIRSLPEQTGEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide