RetrogeneDB ID:
retro_ecab_633
Organism:
Horse ( Equus_caballus )
Location:
24:7959572-7960107 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.87 %
Coverage:
84.04 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_633
TATTGTATCAAAGGTCACTATGCCACTGAGCTTTATTCTGCTGCATCTAAACAGAATAAA
CTGGAACAAGTAGAAAAGGAATTGTTGAAAGTAGCACAAATCTTGAAGGAACCCCGAATG
GCTGCTTCTATTATGAATCCCTACATAAAGCATTCCATTAAAGTGAAAAGCCTAAATGAC
ATGACAGCAAAAGAGAGGGTTTTCTCCCCTCATGTCCAACCTGATAATTTCCTTGCTGAA
AAGGTCGCTTGAGCAATACCCCTGGAGTCATTTCCGCCTTTTCTACCATAATGAGCATCC
CCCAGGGAGAAGAACCTTGCACAGCTACCACTGCATCTCCTTTAGATGAAGCCACTGTTC
CTGAATTACAAACAGTCCTGAAGAGCTTCCTAAGTAAAGGCCAAGTACTGAAATTGGAAG
TTAAACTGATCCATCAATCATGGGTGAAATGGTTATCTGTATTGAAGAGAAATATGTTGA
TATGTCTGCAAAAACCAATATTCAGAAGCTGAGCAGGGCTATGCAGCAGATTTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YGVEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPYIKRSVKMKSLNDMTAKER-FSPLTSNLI-NLLAE-NGRLSNTPGVVSAFSTI
Y...G.YAT.LYSAASKQNKLEQVEKELL.VAQILKEP.MAASIMNPYIK.S.K.KSLNDMTAKER.FSPL.SNLI.N.LAE..GRLSNTPGV.SAFSTI
Retrocopy
YCIKGHYATELYSAASKQNKLEQVEKELLKVAQILKEPRMAASIMNPYIKHSIKVKSLNDMTAKER\FSPLMSNLI/NFLAE/KGRLSNTPGVISAFSTI


Parental protein
MSVHRGEVPCTVTTASPLDEATLAELQTVLKSFLSKGQVLKLEVK-NDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMREVF
MS...GE.PCT.TTASPLDEAT..ELQTVLKSFLSKGQVLKLEVK..DPSIMG.M...I.EKYVDMSAKT.IQKLSRAM...F
Retrocopy
MSIPQGEEPCTATTASPLDEATVPELQTVLKSFLSKGQVLKLEVK/TDPSIMGEMVICIEEKYVDMSAKTNIQKLSRAMQQIF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide