RetrogeneDB ID:
retro_ecab_634
Organism:
Horse ( Equus_caballus )
Location:
24:12154095-12154361 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.44 %
Coverage:
61.81 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_634
GAGGATGAATAAGAGCATGCTCAGGTAACCAAATGTTGGAAAATGGATGATTAGAAGCAA
TGAGTTTTGATGGTGTAAAGTGGTTATGTCCTATCAAAGGAAAACTTAGAAAAACGGTTT
GAATAAATACCTCAGACGGTATTTTGGTTGGTCTGCCAGACTATGGAGATAACAAAGCTG
AGGTAATTTTAAAATACAATGCAGATGAAGGTATAAGTCTTAAGGCATATGGCAAGCTTC
CAAAATATGCTAAAATCAATGAAACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.05
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.16
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EDGQEYAQVIK-MLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET
ED..E.AQV.K.ML.NG.LEAM.FDG.K.LC.I.GKLRK.V.INTSD.ILVGL.DY.DNKA.VILKYNADE..SLKAYG.LP..AKINET
Retrocopy
EDE*EHAQVTK/MLENG*LEAMSFDGVKWLCPIKGKLRKTV*INTSDGILVGLPDYGDNKAEVILKYNADEGISLKAYGKLPKYAKINET


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide