RetrogeneDB ID:
retro_ecab_635
Organism:
Horse ( Equus_caballus )
Location:
24:17180503-17180993 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.2 %
Coverage:
77.99 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
EIF3J
Parental gene aliases:
No gene alias available
Parental gene description:
eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:3270]

Genomic region (view in browser)





>retro_ecab_635
AAAAAGAGGTTAGAAGAACCTGAAGAACCTAAAGTGTTAACACCAGAAGAACAATTAGCA
GATAAACTCCGGCTAAAGAAATTACAGGAAGAGTCAGACCTCGAATTAGCAAAAGAAACT
TTTGGTGTTAATAATACAGTTTATGGAATAGATGCTATGAACCCATCTTCAAGAGATGAC
TTCACAGAGTTTGGAAAGTTGTTAAAAGATAAAATTACACAATATGAAAAGTCACTATAT
TATGCCAGTTTTTTGGAAGCCTTAGTTTGAGATGTGTGTATTTCATTGGAAATTGATGAC
TTGAAAAAGATTACCAATTCATTGACTGTGCTTTGCAGTGAAAAACAGAAGCAAGAAAAG
CAAAGCAAAGCCAAAAAGAAGAAGAAAGGTGTGGTTCCTGGAGGGGGGATTAAAGGCCAC
CATGAAAGACCATCTGGCAGATCATGGTGGTTATGATGGAGGATATGTACAAGACTATGA
AGACTTCATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDD
KKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALV.DVCISLEIDD
Retrocopy
KKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALV*DVCISLEIDD


Parental protein
LKKITNSLTVLCSEKQKQEKQSKAKKKKKGVVPG-GGLKATMKDDLADYGGYDGGYVQDYEDFM
LKKITNSLTVLCS.................VVPG.GGLKATMKD.LAD.GGYDGGYVQDYEDFM
Retrocopy
LKKITNSLTVLCSXXXXXXXXXXXXXXXXXVVPG\GGLKATMKDHLADHGGYDGGYVQDYEDFM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide