RetrogeneDB ID:
retro_ecab_636
Organism:
Horse ( Equus_caballus )
Location:
24:20683947-20684329 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.0 %
Coverage:
99.22 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
CDV3
Parental gene aliases:
No gene alias available
Parental gene description:
CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928]

Genomic region (view in browser)





>retro_ecab_636
GGTGGTGTAGAAAAATCTTCAGGTCCCTGGAATTAAATAGCTCCAGTCTGAGCACCTCCT
GCTCCAGGAATTGTTACAGAAACCCCAGAACCAGCAATGACGTGACGGTGTGTATAGACC
TCCTGGGGCCAGGTTAACCACAACAAGGAAAACACCACAAGGACCACTAGAAATATATAG
TGATGCATAGTTCCCCTCCCTGCCGTTCACTGCCAAGCACATAGAAAGCCAGAAGGATAA
AGAAATGGAGGAGAGCTTTGTAGTAGTCAGCCATAAAACGAGAGGTAGGAATGAGGTTTC
AAAAAACCAGGCCTTTACACTTCAGCTAGACAGCCAGTATGCTGTGCTTGAAAATCAGAA
AAGCAGCCACACACAGTACAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGVEKSSGPWNKTAPVQAPPAPGIVTETPEPAMT-SGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKDKGMQKSFEVVRHRTRRRDEV
GGVEKSSGPWN..APV.APPAPGIVTETPEPAMT..GVYRPPGARLTTTRKTPQGP.EIYSD..FPSL..TAKH.ES.KDK.M..SF.VV.H.TR.R.EV
Retrocopy
GGVEKSSGPWN*IAPV*APPAPGIVTETPEPAMT\DGVYRPPGARLTTTRKTPQGPLEIYSDA*FPSLPFTAKHIESQKDKEMEESFVVVSHKTRGRNEV


Parental protein
SGSQAPTLQLDNRCAVLGGQRSSCAQSS
S..QA.TLQLD...AVL..Q.SS..Q.S
Retrocopy
SKNQAFTLQLDSQYAVLENQKSSHTQYS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide