RetrogeneDB ID:
retro_ecab_637
Organism:
Horse ( Equus_caballus )
Location:
24:23263460-23264094 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.46 %
Coverage:
72.05 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
CDK1
Parental gene aliases:
No gene alias available
Parental gene description:
cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722]

Genomic region (view in browser)





>retro_ecab_637
TCCTTGGATCTTAAGAAATACTTGGATTCTATCCCTCCTGGTCAGTTCATGGATTCTTCA
CTTATTAAGATTGTCTGTACCAAATCCTCCAAGAGATTGTGTTTTATCACCCTAGAAGAG
CTCTTCACAGAGACTAACAACCTCAAAACCTATTGATAACAAATGAACGATTACTAGCTG
ATTTTGGCTTTGCCGGAGCTTTTGGAATACCTCTTAGAGTATACACACATGAGGTAGTCA
CTCTCTGCTATAGACCTCCACAAGTATTGCTGGGGTCAACTCACTATTCAACTCCAGTTG
ACATTTGGAGTCTAGACACCATATTTGCAGAATTAGTAACTAAGTAGCCACTTTGCCATG
GGGATTCAGAAGTTGATCGACTCTTCAGGATTTTCAGAGCTTTGGACACCCTCAACAATG
AAGCATGGCCGGAAGTGGGATCTTTATAAAATTATAAGAATATGTTTCCCAAGTGGAAAA
CAGGAAGTCCAGCATCTCATGTCAAAAACTTGGTTAAAATGGCTCGGATTTGCTTTCAAA
AGTGTTAGTTTATGATCCTGCCAAACAAGTTGCTGGCAAAATAGCCCTGAACCATCCATG
TTTTAATGATTCAGACAATCAGATTAAGAAGATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SMDLKKYLDSIPPGQFMDSSLVK-SYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYS
S.DLKKYLDSIPPGQFMDSSL.K...LYQILQ.IVF.H.RR.LHRD..PQNLLI.......LADFG.A.AFGIP.RVYTHEVVTL.YR.P.VLLGS..YS
Retrocopy
SLDLKKYLDSIPPGQFMDSSLIK/DCLYQILQEIVFYHPRRALHRD*QPQNLLITNERL--LADFGFAGAFGIPLRVYTHEVVTLCYRPPQVLLGSTHYS


Parental protein
TPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDE-NGLDLLSKMLVYDPAKRISGKMA
TPVDIWS..TIFAEL.TK.PL.HGDSE.D.LFRIFRAL.T.NNE.WPEV.SL..YKN.FPKWK.GS.ASHVKNL...NG.DLLSK.LVYDPAK...GK.A
Retrocopy
TPVDIWSLDTIFAELVTK*PLCHGDSEVDRLFRIFRALDTLNNEAWPEVGSL*NYKNMFPKWKTGSPASHVKNLVK/NGSDLLSKVLVYDPAKQVAGKIA


Parental protein
LNHPYFNDLDNQIKKM
LNHP.FND.DNQIKKM
Retrocopy
LNHPCFNDSDNQIKKM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide