RetrogeneDB ID:
retro_ecab_638
Organism:
Horse ( Equus_caballus )
Location:
24:26494474-26494931 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.35 %
Coverage:
81.25 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL9
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]

Genomic region (view in browser)





>retro_ecab_638
GACTTGAAAGACATCAATGTAGAATTCAGTCTCCTTGGAAAGAAAAAGAGCCTCTGGGTT
GACAAATAGTAAAGAAACAGGAACTGGCTACAGTTGGCACTCTGTAGTCACGTACGGAAC
ACGATCAAAGGCATTACATTAGACACCCATTACTGGACGAGGTCTGCGTATGCTCACCGC
CCCATCAACATTGTCATTCAGGAGAATGGGTCTCTTGTTGAAATCCAAAATTTCTTGAGT
AAAAAAGGCATCCATAAAATTCAGATGAGGCCAGGTGCTGCTTGTTCACTATCTCAAGCC
CAGAAAGATGAGTTAATTCTTGAAGTAAACGACATTGAACTCGCACCAAATTTGTTGCGT
TGATTCAGCAAGCCACAGCAGTTAAAACAAGGATATCAGAAAATTTTTAGATAGTATCTA
TGTCTCTAAAAAAGGAACAGTTCAGCAGGTTGATGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSV
D...INVE.SLLGKKK..L.VDK...NR..L......CSHV.N.IKG.TL...Y..RS.YAH.PIN.VIQENGSLVEI.NFL..K.I....MRPG.ACS.
Retrocopy
DLKDINVEFSLLGKKKS-LWVDK**RNRNWLQLA--LCSHVRNTIKGITLDTHYWTRSAYAHRPINIVIQENGSLVEIQNFLSKKGIHKIQMRPGAACSL


Parental protein
SQAQKDELILEGNDIELVSN-SAALIQQATTVK-NKDIRKFLDGIYVSEKGTVQQADE
SQAQKDELILE.NDIEL..N...ALIQQAT.VK.NKDIRKFLD.IYVS.KGTVQQ.DE
Retrocopy
SQAQKDELILEVNDIELAPN/FVALIQQATAVK/NKDIRKFLDSIYVSKKGTVQQVDE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide