RetrogeneDB ID:
retro_ecab_639
Organism:
Horse ( Equus_caballus )
Location:
24:28121650-28122352 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.51 %
Coverage:
52.12 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
CSK
Parental gene aliases:
No gene alias available
Parental gene description:
c-src tyrosine kinase [Source:HGNC Symbol;Acc:2444]

Genomic region (view in browser)





>retro_ecab_639
CCCAAGACAGGCCTGTTCCTGGTGTGGGAGAGCATCAACTACCCTGGGGACTATACGCTG
TCTGTGAACTGTGAAGGCAAAGTGGAGCACTACAGCATCATGTACGACAACAGCAAGCTC
AGCATTAGTGAGGAGGTGTACTTCGAGAGCCTCATGCAGCTGGTGGAGCACTACACCTCA
GGTGCAGATGAAATCTGTACTTGCCTCATCAAGCCAAAGGTCATGGAGGGCACAGAGGAG
GTCCAGGATGAGCTCTTCCTCAGAGGCTGGACGCTGAACATAAAGGACCTGAAGCTGCTG
CAGATCACTGGGAAGGGGGACTTTGGAGACGTGATGCTGAGCTGTTGTGGAGGGAACAAA
GTCTCTGTCAATTACGTTAGGAACGACACTACTGCCCAAGCATTCCTGGCTGAAGCCTTG
GTCATGGCACAAGTTCATCCTAGCAACCAGGTACAGCTTTTGGGCGTGATCACGGCGCAG
AAACGTGGCCTTTACATCATCACTGAGTTCATGGCCAAGGGGAGCCTGGTGGATTACCGG
CAGTTGCTGGATTGGTAGGTGCTGGGCAGAGACTTTCTCCTCAAATTCTCACTAGACCTC
CGTGAGACCATGAAGTACCCAGAGAGCAACAACTTCGTACACCGGGGCCTTGCTGCCGGC
GCCATGCTGGTATCCGAGGACAGCGTGGCCAAGGTCAAGGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTSDADGLCTRLIKPKVMEGTVAAQDEFFRSGWALNMKDLKLL
P.TGLFLV.ES.NYPGDYTL.V.C.GKVEHY.IMY..SKLSI.EEVYFE.LMQLVEHYTS.AD..CT.LIKPKVMEGT...QDE.F..GW.LN.KDLKLL
Retrocopy
PKTGLFLVWESINYPGDYTLSVNCEGKVEHYSIMYDNSKLSISEEVYFESLMQLVEHYTSGADEICTCLIKPKVMEGTEEVQDELFLRGWTLNIKDLKLL


Parental protein
QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDV
Q..GKG.FGDVML....GNKV.V....ND.TAQAFLAEA.VM.Q...SN.VQLLGVI...K.GLYI.TE.MAKGSLVDY.......VLG.D.LLKFSLD.
Retrocopy
QITGKGDFGDVMLSCCGGNKVSVNYVRNDTTAQAFLAEALVMAQVHPSNQVQLLGVITAQKRGLYIITEFMAKGSLVDYRQLLDW*VLGRDFLLKFSLDL


Parental protein
CEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSD
.E.M.Y.E.NNFVHR.LAA...LVSED.VAKV.D
Retrocopy
RETMKYPESNNFVHRGLAAGAMLVSEDSVAKVKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide