RetrogeneDB ID:
retro_ecab_64
Organism:
Horse ( Equus_caballus )
Location:
14:9542781-9543414 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
98.58 %
Coverage:
98.14 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
HMGB1
Parental gene aliases:
No gene alias available
Parental gene description:
High mobility group protein B1 [Source:UniProtKB/Swiss-Prot;Acc:Q08IE6]
Genomic region (view in browser)
>retro_ecab_64
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTG
CAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAG
TTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAGGAGGGAAAATTT
GAAGACATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCT
CCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCTAAGAGGCCTCCTTCG
GCCTTTTTCTTGTTTTGTTCTGAGTATCACCCCAAAATCAAAGGAGAGCATCCTGGCCTA
TCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGAATAACACTGCTGCAGATGAC
AAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGAAGGAGAAATACGAAAAGGATATTGCT
GCATACCGAGCTAAAGGAAAACCTGCTGCAGCAAAAAAGGGAGTCGTCAAGGCTGAAAAA
AGCAAGAAAAAGAAGGAAGAGGAGGAAGACGAGGAAGATGAAGAGGATGAGGAGGAGGAG
GAAGATGAAGAAGATGAAGATGAAGAAGAAGAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.1 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
