RetrogeneDB ID:
retro_ecab_643
Organism:
Horse ( Equus_caballus )
Location:
25:8724171-8724803 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.32 %
Coverage:
85.89 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_643
CAGGAACTCAATAGCAGAGTAGATGATATAGAAGAATGGATCAGTGAGCTAAGCGAAAGA
CTAGAAGAAATCACCCAAGCTGAAGAGATAAAAGGAAAAAAAATTAGACAGAATGAGAAC
ATTCTAAGGGAATTCTGGGACAATATCAAGTGCAATAACATTCATATTATAGGTGTCTGA
GAAGGAGAAGAGAGAAACAAAGGGGTAGAAAATCTATTTGAAGAAACAGTGGCTGAAAAT
TTTCCTAACCTAAGGAAGGAAACAGACATCCAAGTACAGGAAGCACAGAGAGCTCTAAAA
AAGATAAGCCCAAAGAGGCCCACACCAAGACACATTATAATTAAACTCTCCAAAATTAAG
GATAGAGAATCCTAAAAGTTACAAGAGAAAGGCAATAAGTGACATACAAAGGAAATCCCA
TAAGGCTATCAGTGGACTTCTCAGCCAAAAACCTACAGGTGAGAAGAGAATGACATGACA
TATTTAAAGTGCTAAAAACAAAAAACCAACAGCCAAGAATACTCTATCAAGCAAGGGTGT
CATTCAGAATGGAAGGAGAGATAAAGAGCTTCCCAGAGAAGCAAAAACTAAAGGAATTTA
TCACCAAGAAACTGGTTCTACAAAAAATGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ERLNSRVSDTHEQMSEIDERLEEISQAEQKKEKRIRQNENSLRELWDNIKCTNIRFIGVPEGEERDKEAEN----RVAENFPNLKKETDIHIQEAQRTPK
..LNSRV.D..E..SE..ERLEEI.QAE.......RQNEN.LRE.WDNIKC.NI..IGV.EGEER.K..EN.....VAENFPNL.KETDI..QEAQR..K
Retrocopy
QELNSRVDDIEEWISELSERLEEITQAEEXXXXXXRQNENILREFWDNIKCNNIHIIGV*EGEERNKGVENLFEETVAENFPNLRKETDIQVQEAQRALK


Parental protein
KISPKRATPRHIIIKISKMNDKERIPRAARQKK-ISYKGTPIRLSVHFSTETLQARRDWNDIFKTLKDKNLQPRILYPAKIFFRYEGEIKSFPDNQKLRD
KISPKR.TPRHIIIK.SK..D.E.........K...YKG.PIRLSV.FS...LQ.RR...DIFK.LK.KN.QPRILY.A...FR.EGEIKSFP..QKL..
Retrocopy
KISPKRPTPRHIIIKLSKIKDRES*KLQEKGNK/VTYKGNPIRLSVDFSAKNLQVRRE*HDIFKVLKTKNQQPRILYQARVSFRMEGEIKSFPEKQKLKE


Parental protein
FVATSPPLQEIL
F......LQ..L
Retrocopy
FITKKLVLQKML


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide