RetrogeneDB ID:
retro_ecab_645
Organism:
Horse ( Equus_caballus )
Location:
25:14212286-14212976 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.3 %
Coverage:
98.29 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPIA
Parental gene aliases:
No gene alias available
Parental gene description:
ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:10297]

Genomic region (view in browser)





>retro_ecab_645
AAGAAGCTGGCGGGCCGCGCGGCCATGGAGAACCACGTGAGGAATAACCAAGTACTGGGA
ATTGGAAGTGGTTCTACAATTGTCCCTGCTGTGCAACGAATAGCTGAAAGAGTGAAACAA
GAGAATCTGAACCTCGTCTGTATTCCCACGTCCTTCCAGGCCCGTCAGCTCATCCTGCAA
TACGGCTTAATTCTCAGTGACCTGGACCGACATGCAGAGATGGACCTTGCCATTGATGGT
GCTAATGAAGTAGATGCTGACCTCAGTCTCATCAAGGGCGGTGGAGACTGCCTGACCCAG
GAGAAAATTGTGGCTGGCTATGCCAGTCGCTTCATTGTGATTGCTGATTTCAGGAAAGAT
TCAAAGAACCTTGGGGATCAATGGCACAAAGGAATCCCCACCGAGGTCATCCCAATGGCC
CGTGTCCCAGTGAGGCGAGCTGTGACCTAGAAGTTTGGGGGCGCGATTGAACTTCAAATG
GCCATCAAAAAGGCAGGTCCTGTGGTGACAGATAATGGGAATTTTATCCTGGACTGGAAG
TTTGACGGGGTACACAAATGGAGTGAAGTGAACACAGCTATCAAAATGATCCCAGGCGTG
GTGGATACAGGCCTATTCAACAACATGGCTGAGAGAGTTTATTTCGGGTTGCAGGACGGC
TCAATGAACATGAGGGAGAGGCCTTTCTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQ
KKLAGRAA.ENHVRNNQVLGIGSGSTIV.AVQRIAERVKQENLNLVCIPTSFQARQLILQYGL.LSDLDRH.E.DLAIDGA.EVDADL.LIKGGG.CLTQ
Retrocopy
KKLAGRAAMENHVRNNQVLGIGSGSTIVPAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLILSDLDRHAEMDLAIDGANEVDADLSLIKGGGDCLTQ


Parental protein
EKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVTRKFGGTIELRMAINKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPGV
EKIVAGYASRFIVIADFRKDSKNLGDQWHKGIP.EVIPMA.VPV.RAVT.KFGG.IEL.MAI.KAGPVVTDNGNFILDWKFD.VHKWSEVNTAIKMIPGV
Retrocopy
EKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPTEVIPMARVPVRRAVT*KFGGAIELQMAIKKAGPVVTDNGNFILDWKFDGVHKWSEVNTAIKMIPGV


Parental protein
VDTGLFINMAERVYFGMQDGSVNMREKPFC
VDTGLF.NMAERVYFG.QDGS.NMRE.PFC
Retrocopy
VDTGLFNNMAERVYFGLQDGSMNMRERPFC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide