RetrogeneDB ID:
retro_ecab_646
Organism:
Horse ( Equus_caballus )
Location:
25:14238265-14238578 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.44 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_646
ATGGCTAACATTTCTAAAACCCACCAGACTTTCTGTAAGAAGTGTGGTGAGCACCAACCC
CACAATATGACACAGTACAAGAAGGCCAAGGATTCTCATGTGTCCAGGGAAAGCAGTGTC
ACAACAGGAAGCAGAGTGGCTACGGTGAGCAGACTAAGCCAATTTTCAAAAAAAGGCCAA
AACTACAATGAAGATTGTGCCAAGGCCTGAACGCATTGAGCCCAACTACAGACCTAAAAG
AATGCTGGCTACTAAGAGACGGAAGCATTCTGAACTGGGAAGAGATAAGAGAAAGGGCCA
AATGATCCAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYA-QGKRRYDRKQSGYGGQTKPIFR-KKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKK
M.N..KT..TFCKKCG.HQPH..TQYKK.KDS....QGK....RKQSGYG.QTKPIF..KKAKTT.KIV.R.E..EPN.R.KRMLA.KR.KH.ELG.D.K
Retrocopy
MANISKTHQTFCKKCGEHQPHNMTQYKKAKDSHVS/QGKQCHNRKQSGYGEQTKPIFK/KKAKTTMKIVPRPERIEPNYRPKRMLATKRRKHSELGRD-K


Parental protein
RKGQVIQF
RKGQ.IQF
Retrocopy
RKGQMIQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide