RetrogeneDB ID:
retro_ecab_647
Organism:
Horse ( Equus_caballus )
Location:
25:15473468-15474029 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.85 %
Coverage:
85.84 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
NUDT5
Parental gene aliases:
No gene alias available
Parental gene description:
nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Source:HGNC Symbol;Acc:8052]

Genomic region (view in browser)





>retro_ecab_647
GAAAAAACAACTTCCATGGATCCCACTGGTGAAACAAGAACTTGGGAAATTGTGAAAAGT
ATAACCAGGAAAGGACCATTGGCTGATGGTGTGGCGGTCATCCCAGTGCTGCAAAGAACT
CTTCATTATGAATGCATTGTTCTGGTGAAGCAGGTCTGATCACCAATGAGGAGTTACTGC
CTTGAATTCCCCACGAGTGTCGTAGGTGATAATGAAAGCCCGGAAGCAGCTGTTCTTTGG
GAGCTTGAGGAAGAAACTGCCTCTAAAGGTGACGTTGCTGAATGTTCTCCAGCTATATTT
ATATATGCAGGTTTGTCAAACTGTACCACACACATCGTGACAACTATTAATGGAGATGAT
GCTGAAAATGTAAGACCTAAGCCGAAGCCAGAGGATGGAGAATTTGTGGCAGTAATTTCT
TTACCAAAGAATGACCTGCTGAAGAGACTTGATGCTCTAGTGGCTGAAGAACATCTGACG
GTGGATGCCAGAGTCTATTCCTGTGCGTTGGTGTTGAAACAGGCAAACACAAAGCCATCT
GAAGTACCCTCTCTGAAATTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKTTYMDPTGKTRTWETVKRTTRKGQSADGVSVIPVLQRTLHYECIVLVKQFRPPMGGYCLEFPAGLIDENESPEAAALRELEEETGYKGDVAECSPAVG
EKTT.MDPTG.TRTWE.VK..TRKG..ADGV.VIPVLQRTLHYECIVLVKQ...PM..YCLEFP......NESPEAA.L.ELEEET..KGDVAECSPA..
Retrocopy
EKTTSMDPTGETRTWEIVKSITRKGPLADGVAVIPVLQRTLHYECIVLVKQV*SPMRSYCLEFPTSVVGDNESPEAAVLWELEEETASKGDVAECSPAIF


Parental protein
MDPGLSNCTTHIVTVTINGDDAENVRPKPKPGDGEFVEVISLPKNDLLKRLDALVAEEHLTVDARVYSYALALKHANTKPFEVPFLKF
...GLSNCTTHIVT.TINGDDAENVRPKPKP.DGEFV.VISLPKNDLLKRLDALVAEEHLTVDARVYS.AL.LK.ANTKP.EVP.LKF
Retrocopy
IYAGLSNCTTHIVT-TINGDDAENVRPKPKPEDGEFVAVISLPKNDLLKRLDALVAEEHLTVDARVYSCALVLKQANTKPSEVPSLKF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide