RetrogeneDB ID:
retro_ecab_648
Organism:
Horse ( Equus_caballus )
Location:
25:17556004-17556331 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.49 %
Coverage:
95.61 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SH3BGRL
Parental gene aliases:
No gene alias available
Parental gene description:
SH3 domain binding glutamic acid-rich protein like [Source:HGNC Symbol;Acc:10823]

Genomic region (view in browser)





>retro_ecab_648
ATGGTGACCCGTGTGTATATTTCATCTTCCTCTGGCTGTCTGGCGATTAAGAAGAAACAG
CAAGATGTGCTTGGTTTCTTAGAAGCTAACAAAATAGGATTTGAAGAAGAAGAGATTGCA
TCCAATGAAGAAAATTGGAAGTGGATGAGAGAAAATGTACCTGAAAACAGTCAACCAGCC
ACAGGGTACCCCCTGCCACCTCAGATTTTCACTGAAAGCCAGTACCGTGGGGACCATGAG
GACTTCTTTGAAGCCAGAGAAAACAGTGCAGTGTATTCCTTTTTAGGCTCGACAGGCCCA
CCTGGTTCAAAGGAAACAGAAGCTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAP
MV.RVYI.SSSG..AIKKKQQDVLGFLEANKIGFEE..IA.NEEN.KWMRENVPENS.PATGYPLPPQIF.ESQYRGD...FFEAREN.AVY.FLG.T.P
Retrocopy
MVTRVYISSSSGCLAIKKKQQDVLGFLEANKIGFEEEEIASNEENWKWMRENVPENSQPATGYPLPPQIFTESQYRGDHEDFFEARENSAVYSFLGSTGP


Parental protein
PGSKEAEAQ
PGSKE.EAQ
Retrocopy
PGSKETEAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide