RetrogeneDB ID:
retro_ecab_65
Organism:
Horse ( Equus_caballus )
Location:
21:28168490-28171001 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.23 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Tuftelin-interacting protein 11 [Source:UniProtKB/TrEMBL;Acc:F6TXE8]

Genomic region (view in browser)





>retro_ecab_65
ATGTCGCTGCCCCACTTTTACCGGGACGGGGAAGGCCACATGGATGATGATGAGGACGAG
CGGGAGAACTTCGAGATCACCGACTGGGATCTCCAGAATGAATTCAACCCCAACCGGCAG
CGCCACTGGCGGACCAAGGAAGAGGCCACCAATGGAGTGTGGACAGAGCGAGCCTCGGAT
GGAGAGAGACCCAGCTTTGGAGGCAAACGAGCTCGCGACTGCTCAGCGCCAGTCAGCTTC
ATCAGCGCGGGGCTCAAGAAGCGGGCAGCAGAGGAGGCGGAGCTGGAAGATTCTGATGAC
GAAGAGGAGCCTGTCAAGCAGGATGACTTTCCTAAGGATTTTGGACCCAAGAAGTTAAAA
ACGGGAGGCAACTTTACACCCAGCCAGAAAGGCTTTGCTGGAGGAACCAAGTCTTTCATG
GATTTTGGCAGCTGGGAGAGACACACAAAAGGAATTGGACAGAAGCTTCTTCAGAAAATG
GGCTACGTCCCTGGGAGGGGCCTCGGGAAGAATGCACAAGGTATCATTAAGCCAATCGAA
GCCAAACAGAGAAAGGGCAGAGGCGCTGTGGGAGCTTACGGCTCCGAGCGCACCCCCCAG
TCCCTGCAGGACTTCCCTGTGGTCCACTCAAAGGAAGAGGCCGAGGAGTTTCAGAAGGAG
CTGAGCCAGTGGAGACAAGGCCCCAGTGGAAGCAAGAAGAAGCCCAAATACTTTTACAAG
ACCGTGGAAGAGTTGAAGGCCAAGGGCAGGGTTAGCAAGCAGCTCACCGCCCCCGAGAAG
GAGCTTTCTCAGGTCAAGGTCATAGACATGACTGGCCGCGAGCAGAAGGTCTACTTCAGC
TACAGCCAGATCAGCCACAAGCACAACGTCCCCGGCGACGGGCTGCTGCTGCAGTCGCCG
CAGCCACCACAGCCCGGCAAAGAGGCCAAGGCCCCGGGCTTCGCGCTGCCAGAGCTGGAG
CACAACCTGCAGTTGCTCATCGACCTCACGGAGCAGGAGATCATCCAGAACGACCGGCAG
CTGCAGTACGAGCGGGACATGGTGGTCAACCTCTCCCACGAGCTGGAGAAGATGTCGGAG
GTCCTGGACCACGAGGAGCGGCTCATCTCCAAACTCAGCAAGGTCTTGGAGATGGTGGAG
GAGTGCGAGCGGTGCATGCAGCCCAACTGCAGCGACCCCCTCACGCTGGACGGGTGCACC
CACATCTTTGAGACCCTGAGGGACAAGTACTATGAGGACTACTGGATGTCCCACCGTGTG
GACCTCACTGTGGCCATCGTCTACCCACTCATGAAGGAGTACTTCAAGGAGTGGGACCCC
CTCAAAGACTGTACTTATGGCACCGAGATCATCTCTAAGTGGAAAAGCCTCCTGGAGAAC
GACCAGCTCCTGTCGCACGGTGAGCAGGACCTCTTGGCAGATGCCTTTCACAGGCTCATT
TGGGAAGTCTGGATGCCTCTCGTTCGAAACATTGTCACCCAGTGGCAACCAAGGAACTGT
GACCCGATGGTGGACTTTTTGGATAGCTGGGTGCACATTATCCCCGTGTGGATCTTAGAT
ACCATCCTGGACCAGCTCATCTTCCCCAAGCTGCAGAAGGAGGTGGAGAACTGGAACCCA
CTGACGGACACCATCCCCATCCATTCCTGGATCCACCCGTGGCTGCCCCTCATGCAGGCA
CGTCTGGAGCGGCTCTATTCCTCCATCCGCAGCAAACTGTCCCGTGCCCTGCAGAAGTGG
CACCCCAGCGACTCCTCAGCCAAGCTCATTCTGCAGCCCTGGAAGGAGGTCTTCACCCCT
GGCTCCTGGGAAGCATTCATGGTCAAGAACATAGTGCCCAAGCTGGAGATGTGTCTTGGC
GAGTTGGTCATTAACCCCCACCAGCAGCACATGGATGCCTTTTATTGGGTCATCACCTGG
GAAGGGATGATCTCTGTCTCCAGCCTGGTGGGGCTTCTTGAAAAGCACTTCTTTCCCAAG
TGGCTTCAGGTGCTGTGCTCCTGGCTCAGTAACAGCCCCAATTATGAGGCGATCACCAAG
TGGTACCTGGGTTGGAAGTCCGTGTTCTCAGACCAAGTGCTGGCACACCTGTCCGTCAAC
GACAAGTTTAATGAAGCACTTGACATTATGAACAGGGCGGTGTCCTCCAATGTGGGGGCC
TACATGCAGCCCGGAGCACGAGAGAACATTGCCTACCTCACCCACGTAGAGCGGAGGAAG
GACTTCCAGTACGAGGCCATGCAGGAGCGACGGGAGGCTGAGAACATGGCCCAGAGGGGC
ATTGGCATGGCCGCCGGCTCCATGCCCATGAACTTTAAGGACCTCATTGAGACCAAGGCT
GAGGAACACAACATCGTCTTCATGCCCATCATCGGGAAGCGACACGAAGGGAAGCAGCTC
TACACCTTTGGCCCCATCGTCATGTACATTGACCGGGGAGTGGTCTTCATCCAGGGCAAG
AAGACCTGGGTGCCCACCTCCCTGCAGAGCCTGATTGACATGGCCAAGTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.23
SRP021940_cerebellum 0.25
SRP021940_embryo 0.53
SRP021940_placental_villous 0.4
SRP021940_synovial_membrane 0.57
SRP021940_testis 10.44

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLSHLYRDGEGRMDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSDEERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDD
MSL.H.YRDGEG.MDDD.DERENFEITDWDLQNEFNPNRQRHW.TKEEAT.GVW.ER.SD.ERPSFGGKRARD.SAPV.FISAGLKK.AAEEAELEDSDD
Retrocopy
MSLPHFYRDGEGHMDDDEDERENFEITDWDLQNEFNPNRQRHWRTKEEATNGVWTERASDGERPSFGGKRARDCSAPVSFISAGLKKRAAEEAELEDSDD


Parental protein
EEKPVKQDDFPKDYGPKKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGHKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTPQ
EE.PVKQDDFPKD.GPKKLKTGGNF.PSQKGFAGGTKSFMDFGSWERHTKGIG.KLLQKMGYVPGRGLGKNAQGII.PIEAKQRKG.GAVGAYGSERTPQ
Retrocopy
EEEPVKQDDFPKDFGPKKLKTGGNFTPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIIKPIEAKQRKGRGAVGAYGSERTPQ


Parental protein
ALQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRVSKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHSVPDDGLPLQS
.LQDFPVV.S.EEAEE.FQKELSQWR..PSGSKKKPKY.YKTVEELKAKGRVSK.LTAP.KELSQVKVIDMTGREQKVY.SYSQISHKH.VP.DGL.LQS
Retrocopy
SLQDFPVVHSKEEAEE-FQKELSQWRQGPSGSKKKPKYFYKTVEELKAKGRVSKQLTAPEKELSQVKVIDMTGREQKVYFSYSQISHKHNVPGDGLLLQS


Parental protein
PQPPQPGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLSHELEKMSEVLDHEERLISNLSKVLEMVEECERRMQPNCSDPLTLDEC
PQPPQPGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLSHELEKMSEVLDHEERLIS.LSKVLEMVEECER.MQPNCSDPLTLD.C
Retrocopy
PQPPQPGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLSHELEKMSEVLDHEERLISKLSKVLEMVEECERCMQPNCSDPLTLDGC


Parental protein
ARVFETLQDKYYEEYRMSDRVDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRLIWEVWMPFVRNIVTQWQPRN
...FETL.DKYYE.Y.MS.RVDL.VAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHG.QDL.ADAFHRLIWEVWMP.VRNIVTQWQPRN
Retrocopy
THIFETLRDKYYEDYWMSHRVDLTVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGEQDLLADAFHRLIWEVWMPLVRNIVTQWQPRN


Parental protein
CDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWNPLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKEVFT
CDPMVDFLDSWVHIIPVWILD.ILDQLIFPKLQKEVENWNPLTDT.PIHSWIHPWLPLMQARLE.LYS.IRSKLS.ALQKWHPSDSSAKLILQPWKEVFT
Retrocopy
CDPMVDFLDSWVHIIPVWILDTILDQLIFPKLQKEVENWNPLTDTIPIHSWIHPWLPLMQARLERLYSSIRSKLSRALQKWHPSDSSAKLILQPWKEVFT


Parental protein
PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSV
PGSWEAFMVKNIVPKL.MCLGELVINPHQQHMDAFYWVI.WEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYE.ITKWYLGWKS.FSDQVLAH.SV
Retrocopy
PGSWEAFMVKNIVPKLEMCLGELVINPHQQHMDAFYWVITWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEAITKWYLGWKSVFSDQVLAHLSV


Parental protein
KDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEGKQ
.DKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTH.ERRKDFQYEAMQERREAENMAQRGIG.AA.S.PMNFKDLIETKAEEHNIVFMP.IGKRHEGKQ
Retrocopy
NDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHVERRKDFQYEAMQERREAENMAQRGIGMAAGSMPMNFKDLIETKAEEHNIVFMPIIGKRHEGKQ


Parental protein
LYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
LYTFG.IV.YIDRGVVF.QG.KTWVPTSLQSLIDMAK
Retrocopy
LYTFGPIVMYIDRGVVFIQGKKTWVPTSLQSLIDMAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide