RetrogeneDB ID:
retro_ecab_650
Organism:
Horse ( Equus_caballus )
Location:
25:32715624-32716290 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.7 %
Coverage:
54.94 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
SEPT7
Parental gene aliases:
No gene alias available
Parental gene description:
septin 7 [Source:HGNC Symbol;Acc:1717]

Genomic region (view in browser)





>retro_ecab_650
CAACAACTGAAAGAAACCCAAGAATATAAAATTAAAATAGATGAACTTCCAGCAACAGAT
GATGAAGAAGAAAAGCTTGTTAAAAACATAAAGGACCATTCACCTCTTGCTGTGAACGGT
AGTAACTTCATTGAAGTTAGCGGCAGAAGGGTCAGAGGAAGGCCGCATCCTTGGGGTGTT
GCTGACATTGAAAATGGTGAAGATTGTGATTTTACAATTCTAAGAAATATGTTAATACGA
GGACACTTGCAGGACTTGTAAGATGTCACTAATAATGTACGCTATGAGAACTACAGAGGC
AGAAAACTGACAGCTGTGACGTCCGTTGGAGTTGATAACAGCGAGAACAAAGGGCAGCTT
CTGAAGAGCCCTCGGGCACCCATGGAAGAAGAAGGAAGAGACATGGTGGCCACGATGAGG
GAGATGGAGATGGAGCAGGTGTTTGAGACGAAGGCCAGAGAAGAAGTTCAAAACTGAAGG
ATTCTGAGGGCAAGCACCAACGGCACCATGAGTAAACAAAAAAGAATTTGGAAGCAGCGC
AAGGAATTAGAGGACGAATGTCGCCAGTTTGAAGATGAGAAGGCAAACTGGGAAGCTGAG
CGGATTTTAGAACAACCGAGCTCTCTGAGAAGCTTGGAAAAGAACAAGAAGGAGGCAAAG
GTCTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY
Q..KE.QE.KIKI.E.P.TDDEEE.KLVK.IKD..PLAV.GSN..IEV.G.RVRGR..PWGVA..ENGE.CDFTILRNMLIR.H.QDL.DVTNNV.YENY
Retrocopy
QQLKETQEYKIKIDELPATDDEEE-KLVKNIKDHSPLAVNGSN-FIEVSGRRVRGRPHPWGVADIENGEDCDFTILRNMLIRGHLQDL*DVTNNVRYENY


Parental protein
RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ-KLKDSEAELQRRHEQ-MKKNLEAQHKELEEKRRQFEDE
R.RKL.AVT..GVDN..NKGQL.KSP.A.MEEE.R..VA.M...EMEMEQVFE.K..E.VQ.KLKDSE...QR.H.....K....Q.KELE...RQFEDE
Retrocopy
RGRKLTAVTSVGVDNSENKGQLLKSPRAPMEEEGRDMVATMR--EMEMEQVFETKAREEVQ/KLKDSEGKHQR-HHE\KQKRIWKQRKELEDECRQFEDE


Parental protein
KANWEAQQRILEQQNSSRTLEKNKKKGKIF
KANWEA..RILEQ..S.R.LEKNKK..K.F
Retrocopy
KANWEA-ERILEQPSSLRSLEKNKKEAKVF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide