RetrogeneDB ID:
retro_ecab_651
Organism:
Horse ( Equus_caballus )
Location:
25:7927649-7928132 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
77.64 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_651
ATGTGCTCCCAGTTTGACCATGATGAAATTAAAAGGCTGAGCAAGAGGTTTAAGAAGCTG
GACTTGGACAATTCGGGCTCTCTGAGCGTGGATGAGTTCCTGTCGCTGCCCCAGCTGCAG
CGGAATCCGTTGGCGAAGAGAGTGATTGACGTCTTCGACACCGACGGCAATGGCGTAGTG
GACTTCAAGGAATTCATCGTGGGGACCTCCCAGTTCAGTGTCAAGGGCAGCGAGGAGCAG
AAGCTAAGGTTTGCTTTCAGCATCTACGACATGGACAAAGACGGCTACATTTCCAACGGA
GAGCTCTTCCAGGTGCTGAAGTTGATGGTGGGGGACGACACCCTGACAGACTGGGAGTTA
CAGGAGGTCGTCGACAAAACCATCATCTGCCTGGATACAGACGGCGATGGGAAAATATCC
TACGAGGAATTCAGCGCTGTGGTCCGAGGCCTGGAGATCCACAAGAACTTGGTGGTGGCT
GTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.0
SRP021940_testis 415.83

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNG
MCS.FD.DEIKRL.KRFKKLDLDNSGSLSV.EF.SLP.LQ.NPL..RVID.FDTDGNG.VDFKEFI.G.SQFSVKG..EQKLRFAF.IYDMDKDGYISNG
Retrocopy
MCSQFDHDEIKRLSKRFKKLDLDNSGSLSVDEFLSLPQLQRNPLAKRVIDVFDTDGNGVVDFKEFIVGTSQFSVKGSEEQKLRFAFSIYDMDKDGYISNG


Parental protein
ELFQVLKMMVGNN-LKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV
ELFQVLK.MVG...L.D..LQ..VDKTII..D.DGDG.IS.EEF.AVV.GL.IHK..VV.V
Retrocopy
ELFQVLKLMVGDDTLTDWELQEVVDKTIICLDTDGDGKISYEEFSAVVRGLEIHKNLVVAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide