RetrogeneDB ID:
retro_ecab_652
Organism:
Horse ( Equus_caballus )
Location:
25:13291057-13291468 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.66 %
Coverage:
75.98 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
BNIP3
Parental gene aliases:
No gene alias available
Parental gene description:
BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084]

Genomic region (view in browser)





>retro_ecab_652
GCCAAGAGTTCTCGCTGCGACAGCCCGCCTCGCTTGCAGACCCCACAGGATACAAACAGA
GCCTCTGAAACAGACACCCACAGCATTGGAGAGAAAAACCAGCTCTCAGTCTGAGAAAGA
TTATGTTGAGAGAAGGAAAGAAGTTTTGAAAGCATCTTGCAGAAAAACTCAGACTGGATA
TGGGATGGGTCAAGTCGGCCAGATAATATCCCCCGCAAGGAGCTCCTTTTCAGACGCCTG
AAGCGCCAAACCACACTCAGTGTGAGAAAACATGCGTGTTATGAAGAAAGGGGGCATTTT
CTCAGCAGAATTTCTAAAAGTTTTCTTCTGTCTCTGTTGCTGTGTCATCTGCTGGCCACA
GGGTTGGGGATATATATTGAAAGGCATCTGACAACCTCCACCAGTACCTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKSSHCDSPPRSQTPQDTNRAFETDTHSIGEKNSSQSEEDYI-ERRKEVESILKKNSDWIWDWSSRPENVPPKEFLFRHPKRTATLSMR-NTSVMKKGGI
.KSS.CDSPPR.QTPQDTNRA.ETDTHSIGEKN.....E....E.....ESIL.KNSDWIWD.SSRP.N.P.KE.LFR..KR..TLS.R.N..VMKKGGI
Retrocopy
AKSSRCDSPPRLQTPQDTNRASETDTHSIGEKNQLSV*ERLC*EKERSFESILQKNSDWIWDGSSRPDNIPRKELLFRRLKRQTTLSVR\NMRVMKKGGI


Parental protein
FSAEFLKV-FLPSLLLSHLLAIGLGIYIGRRLTTSTSTF
FSAEFLKV.FL.SLLL.HLLA.GLGIYI.R.LTTSTSTF
Retrocopy
FSAEFLKV/FLLSLLLCHLLATGLGIYIERHLTTSTSTF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide