RetrogeneDB ID:
retro_ecab_654
Organism:
Horse ( Equus_caballus )
Location:
26:3114202-3115098 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.11 %
Coverage:
99.34 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL5
Parental gene aliases:
No gene alias available
Parental gene description:
60S ribosomal protein L5 [Source:RefSeq peptide;Acc:NP_001075354]

Genomic region (view in browser)





>retro_ecab_654
CTGTTCTGCAGGATGGGGTTTGTCAAAGTTGCCAAGAATAAGGCCTACTGCAAGAGATAC
AAGTGAAATTTAGAAGACGACGAGAGGGTAAAACTGATTACTATGCTCAGAAACACTTAG
TAATCCAGGATAAAAATAAGCACAACACACCCAAATACAGGATGATAGTTCATGTAACCA
ACAGAGATGCCATTTGTCAGATGGCTTATGCCCGTATAGAAGGAGAGATGATAGTTTGTG
CAGCTTGTGCTCATGAACTCTTGGAGTTTGGCGCGAAGACTGGCCTCACACATTATGCAT
GCTGCCCTGGCCCGCTGCTGGCCCACACGGTTCTCAATAGGTTTGGCATGGACAAGATCT
GTGAAGGCCAAGTGGAGGTGACCGGAGAGGAACACAACGTGGAAAGCATCGATGGTCAAC
CTGGTGCCTTCACCTGCTATTTGGATGTAGGGTTTGCCAGAACTACTACTGGAAATAAGG
TTTTTGGGGCCCTGAAAGGAGCTGTGGGTGGAGGCTTGTCTATACCTCACAGTACCAAAC
GATCCCCTAGTTATGATTCAGAGAGCAAGGAATTCACTGCAGAAGTACAATGGAAGCACA
TCATGGGTCAGAACATTGCAGATTATATGTGTTACCTGGTGGAAGAGGATGAGGATGCCT
ACAAGAAACAATTTTCTCAGTCCATAAAGAACAATGTAACTCCAGACTTGATGAAAGAGA
TGTGTAAGAAAGCTCATTCTGCTGTATGAGAGAATCCGGTCTATGCCAAGAAGCCTAAGA
AAGAAGTTAAAAAGAAGAGGTGGAACCGTCCCAAGATGTCTCTTGCCCAGAAGAAAGATT
GGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCACAAGAGCAGACCACTGAGAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFRRMGFVKVVKNKAYFKRY-QVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNY
LF.RMGFVKV.KNKAY.KRY.QVKFRRRREGKTDYYA.K.LVIQDKNK.NTPKYRMIV.VTNRD.ICQ.AYARIEG.MIVCAA.AHEL...G.K.GLT.Y
Retrocopy
LFCRMGFVKVAKNKAYCKRY/QVKFRRRREGKTDYYAQKHLVIQDKNKHNTPKYRMIVHVTNRDAICQMAYARIEGEMIVCAACAHELLEFGAKTGLTHY


Parental protein
AAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVH
A...C.G.LLA...LNRFGMDKI.EGQVEVTG.E.NVESIDGQPGAFTCYLD.G.ARTTTGNKVFGALKGAV.GGLSIPHSTKR.P.YDSESKEF.AEV.
Retrocopy
AC--CPGPLLAHTVLNRFGMDKICEGQVEVTGEEHNVESIDGQPGAFTCYLDVGFARTTTGNKVFGALKGAVGGGLSIPHSTKRSPSYDSESKEFTAEVQ


Parental protein
RKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHSAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA
.KHIMGQN.ADYM.YL.EEDEDAYKKQFSQ.IKNNVTPD.M.EM.KKAHSA..ENPVY.KKPKKEVKKKRWNRPKMSLAQKKD.VAQKKASFLRAQE...
Retrocopy
WKHIMGQNIADYMCYLVEEDEDAYKKQFSQSIKNNVTPDLMKEMCKKAHSAV*ENPVYAKKPKKEVKKKRWNRPKMSLAQKKDWVAQKKASFLRAQEQTT


Parental protein
ES
ES
Retrocopy
ES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide