RetrogeneDB ID:
retro_ecab_655
Organism:
Horse ( Equus_caballus )
Location:
26:13346797-13347460 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
95.48 %
Coverage:
67.17 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
CNN3
Parental gene aliases:
No gene alias available
Parental gene description:
calponin 3, acidic [Source:HGNC Symbol;Acc:2157]
Genomic region (view in browser)
>retro_ecab_655
ATCTTTTTGAGAATGGAAACGACCCAGGTTCAGACTACGCTGGTGGCTCTAGCAGGTCTG
GCTAAAACAAAAGGATTCCATACAACCATTGACGTTGGAGTTAAGTATGCAGAAAAACAA
ACAAGACGTTTTGATGAAGGAAAATTAAAGGCTGGCCAGAGTGTAATTGGTTTGCAGATG
GGAACCAACAAATGCGCCAGCCAAGCAGGTATGACAGCCTATGGGACTAGGAGGCATCTT
TATGATCCCAAAATGCAAACTGACAAACCTTTTGACCAGACCACGATTAGTCTGCAGATG
GGCACCAACAAAGGAGCCAGCCAGGCGGGGATGTTAGCGCCGGGTACCAGGAGAGACATC
TACGATCAGAAGCTAACATTACAACCAGTGGACAACTCGACAATTTCTCTACAGATGGGT
ACCAACAAAGTCGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTGGGGCCGCAAGTATAT
GATCCCAAATACTGTGCTGCTCCAACAGAACCTGTCATTCACAATGGAAGCCAAGGAACA
GGAACAAATGGGTCGGAAATCAGTGATAGTGATTATCAGGCAGAATACCCAGAAGAATAT
CATGGCGAGTACCAAGATGCCTACCCCAGAGATTACCAATATGGCGACCAAGGCCTTGAT
TAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.26 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.34 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
