RetrogeneDB ID:
retro_ecab_656
Organism:
Horse ( Equus_caballus )
Location:
26:17978559-17979363 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.89 %
Coverage:
77.78 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
NIPA2
Parental gene aliases:
No gene alias available
Parental gene description:
non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044]

Genomic region (view in browser)





>retro_ecab_656
GAGATGGCCAACTTTACTGTTTATGTTTACAATGGCAAGACTAGTGACTTAGAAGTTTTT
CATGTTCTAGTAAGTGCTATTTTTCTTCATATTTTCTAAACAAAAGACTAAATTTTCATG
GGAAAATTGAGTGCTTGTTAAACTGCCCTCAATCTCCACTTACAGTCATTCATGCTTCAA
AAGAAGAGAAGTTAGAGACTAACAAAATGTCTCACAAGCTAATTGATCTGGGTTTGGGGT
TTTTGAAGTCTTTGTGGTCATTGTGTCGTCTGTGGTAGGATCTTGCTCTAGACAGACCAA
CATTTATATAACAATATGCTCCGTAATTAAAGCATTTTCTGTATCCTGTTTTAAAGGCTT
GGATATTGTTATTAAATAACTTCTTGTGGGAAAGTCTCTTCTGGACATCCCTTGGCTCAT
TCTTCTGCTGAGTTTTATAGTCTGTGTAAGCACACAGATTAATTATCCAAATAGGCCCTA
GATATAATCAACACTTCTACAGTGACTCCGTTATGTTAGGTATTCTTTGAAGCATCAGTT
TTGACTAGTTCAGTTCTTCTTTGAAAGGAGTGACAAGATATGTCTGCTGATAGTACTTTG
AGCTCCTCCTTTACAATTTTGTTGGAAAAAATTTTGTAATATTTTTGTGCCTTTAAAGAC
CTCAGTTTTCATCTACCAAGCCAGCCTATGTCCTTTCAAAAAGATGAAAAAGTAACGAAT
GACAATCACTGTAATACGTATGTATTTCTTAATAATAATGAAAAAAACTTAACTGGTGTA
ATTAAACAGCAAACTGAAGAAAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVANFAAYAFAPATLVTPLGALSVLVSAIL-SSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGD-PGFVVFATLVVIVSLILIF
E.ANF..Y.....T....L....VLVSAI..SSYFLN.RLN.HGKI.CLL....S...VIHA.KEE..ET.N.MSHKL.D..GF.VF...VVIVS.....
Retrocopy
EMANFTVYVYNGKT--SDLEVFHVLVSAIF/SSYFLNKRLNFHGKIECLLNCPQSPLTVIHASKEEKLET-NKMSHKLID/SGFGVFEVFVVIVSSV---


Parental protein
VVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR-ALDIFNTSIVTPIYYVFFTTSVLTCSAI
.VG....QTNI..YITICSVI.AFSVSC.KGL.I.IK.L..GK..L..P...ILLLS.IVCVSTQINY.NR.ALDI.NTS.VTP...VFF..SVLT.S..
Retrocopy
-VGSCSRQTNI--YITICSVIKAFSVSCFKGLDIVIK*LLVGKSLLDIPWL-ILLLSFIVCVSTQINYPNR/ALDIINTSTVTPLC*VFFEASVLTSSVL


Parental protein
LFKEWQDMPVDDVIGTLSGFFTIIVGIFLLH--AFKDVSFSLASLPVSLRKDEKAVNGNLSNMYEVLNNNEESLTCGIEQHTSEN
L.KE.QDM..D....TLS..FTI.....L....AFKD.SF.L.S.P.S..KDEK..N.N..N.Y..LNNNE..LT..I.Q.T.EN
Retrocopy
L*KE*QDMSAD---STLSSSFTILLEKIL*YFCAFKDLSFHLPSQPMSFQKDEKVTNDNHCNTYVFLNNNEKNLTGVIKQQTEEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide