RetrogeneDB ID:
retro_ecab_657
Organism:
Horse ( Equus_caballus )
Location:
26:20345688-20346518 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.05 %
Coverage:
63.89 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
DONSON
Parental gene aliases:
No gene alias available
Parental gene description:
downstream neighbor of SON [Source:HGNC Symbol;Acc:2993]

Genomic region (view in browser)





>retro_ecab_657
ACTCCAGATGTATCATTCTCGGATCTGATATTCCATCCTCAGAAAGTACGGGGTTACCCG
TGGACTGCAGTATTAAAACCTGACTCCTTTCACCTCTTCTCAACTTTATCTGAGAGATCA
TTTGAAAGCAAAGGGAAAGGCTCAAGGTATTGTCCAGCATTGTAGGACAATAGAAGTTAT
TTTGCCTCAAAGTACACAGGATCCGAAACTCTTCCCTGAGCTCCGTTGTACATTCCAGCA
CTGTCTTATCTATTGGCTCCACCCTGCCTTGCCTTGGCTACCACTGTTCCCCGATGTTGG
AACTGATAGAAAATAGCGGAAAAGACAAGTCCTTGGGCAAATGATGAAACTGTGCAACGT
ATTTTAATGAATAACTCGTCTGTGAGCTTTAATTCTCTGTATAATCTGCTGAAGACAAAA
CTTTATCCCAAGTTCTACATTTATATCTATGAGCTTACTATCCTGTTCCATGCAGCAGGA
TTAGCAGGAAATGATATCCTCATGGCTGTCATATCTCCTACAATTAGAGGTGTAAGACAA
GGCATGGAAAAATGAAAGTACTACGTTTTCTCTACCTTTAATAAAAGAAAATGGTCATAA
ATAGAAGAAAGCCTCTGGACAAAGGGACAGGAGGAACGAGCAATCAGTGATGAAGATGAT
GAAGATGGAGAAGAAAGTTTTTCCTGGCTTAAAGAGATAGGTGTGCAAGACAAAATTTTA
AAAAAAGCAGACATACTCTCTGTCAAGCTATGTAAAGAGAAACATGAATACAAAAGGATC
ACAGACCTGGGTCTGTTGTATTGGCGAATGGAATCCACGTCTTTGCTGTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TPHVSSSE-SDILSSGSTELPVDWSIKTRLL-FTSSQPFTWADHLKAQEEAQGVVQHCRATEVTLPPSIQDPKLCTELRRAFQQSLVYWLHPAFPWLPLF
TP.VS.S..SDI.SS.ST.LPVD.SIKT.LL.FTSSQ.....DHLKA...AQG.VQHCR..EV.LP.S.QDPKL..ELR..FQ..L.YWLHPA.PWLPLF
Retrocopy
TPDVSFSD/SDIPSSESTGLPVDCSIKT*LL/FTSSQLYL-RDHLKAKGKAQGIVQHCRTIEVILPQSTQDPKLFPELRCTFQHCLIYWLHPALPWLPLF


Parental protein
PRIGADRK-MAGKASPWSADEALQDILMSDWSVSFTSLYNLLKTKLCPYFYVCTYQFTILFRAAGLAGNDVITALISPTTRGLREAM-KNEGIEFSLPLI
P..G.DRK..A.K.SPW..DE..Q.ILM...SVSF.SLYNLLKTKL.P.FY...Y..TILF.AAGLAGND...A.ISPT.RG.R..M.KNE...FSLPLI
Retrocopy
PDVGTDRK/IAEKTSPWANDETVQRILMNNSSVSFNSLYNLLKTKLYPKFYIYIYELTILFHAAGLAGNDILMAVISPTIRGVRQGM\KNESTTFSLPLI


Parental protein
KENGQE-KKAS-RTSLGHEEEQAMSDEDEEESFSWL-EEMGVQDKI-KKPDILSIRLRKEKHE-VQMDHRPESVVLVKGMNTFTL
KENG...KKAS.......E.........E...F..L..E.GVQDKI.KK.DILS..L.KEKHE..Q.DHRP.SVVL..G...F..
Retrocopy
KENGHK*KKASGQRDRRNEQSXXXXXXXEKKVFPGL/KEIGVQDKILKKADILSVKLCKEKHE/IQKDHRPGSVVLANGIHVFAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide