RetrogeneDB ID:
retro_ecab_658
Organism:
Horse ( Equus_caballus )
Location:
26:20514745-20515624 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.6 %
Coverage:
99.31 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_658
AGACAAAGGAATATGTTCCAAATAAAAGAACAGGACAGATACTCAGTAAAAGAACTAACC
AAAACAGAGATAAACCATCTACCTGATAAAGAGCACAAACTAATAGTCATCAAGATGCTT
AGTGAACCGGGGAGAAAAATAGATGAATACAGTGAGAACTTCAACAAAGAATTATAAAAT
ATAAAGAAGAATCAATCAGAGCTGAATAATACAATAATGGAAATGAACAATTCACTAGAG
AGAATCAACAGCAGAGTAGATGCCACAGATGAATGGATCAGTGACTTGGAGGAAAGAGAG
GAAATCACCCATGCTAAACAGAAAAAAAACCCAACAAGAACAAGGACAGTCTAATGGACA
TCTGGGACAACATCAAGTATACTAATATCTGCATTATAGGTGTCCTAGAAGGTGAAGAGA
GAGACAAAGGAGCAAAGAACTTATATAAAGAAATAGTTGAAAACTTCCCTAATCTGGGAA
AGGAAACAGACATCCACATACAGGAAGAACAGCGACTACCGAACAAGATGAACCAAAAGA
GGCTCACACCAAGACACATTATAGTTAAAGTGTCAAGAATTAAAGATAAAGAAAGAATCC
TAAAGACTGCAAGATAAAAGCAACAAGTTACCATACAAAGGAAATGCCATAAAACTACTG
GCTGACTTCTCAGCAGAAACCTTACAGGCTAAAAAGGAGCAGTATGATATATCCCAAGTG
CTGAAAGGAAAAAAATCTACAACCAAGAATACTCTATTCTACCCAGCAAGGTGATCACTT
AGAATGAAAGGAGAGAGAAAGAGCTTTCCAAATAAGCAAAAACTAAAGGAGTTCATCACC
ACTAAATCAGCCTTACAAGAAATGTTAAAGGGCTGTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQR..FQ.KEQD....KEL..TEI..LPDK..K..V.K.L...GR..DE.SENFNKEL.NIKK.QSE..NTIMEM.NSLE..NSRVD.T.E.IS.L.ER.
Retrocopy
RQRNMFQIKEQDRYSVKELTKTEINHLPDKEHKLIVIKMLSEPGRKIDEYSENFNKEL*NIKKNQSELNNTIMEMNNSLERINSRVDATDEWISDLEER-


Parental protein
EEVTQAEQIKEKM-KKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAEIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNK
EE.T.A.Q......K..DSL.D.WDNIK.T.I.I.GV.E.EE.DKGA......I.ENFP.L.KE.D...QE.Q..PN..N.KR.TPRHII.K.S.....K
Retrocopy
EEITHAKQXXXPT/KNKDSLMDIWDNIKYTNICIIGVLEGEERDKGAKNLYKEIVENFPNLGKETDIHIQEEQRLPNKMNQKRLTPRHIIVKVSRI-KDK


Parental protein
ERILKAARERQQVT-YKGNSIRLSADLSAETLQARRKWHSIFKVLNRKKPPR---ILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
ERILK.AR..QQVT.YKGN.I.L.AD.SAETLQA......I..VL..KK........Y.AR.S..M.GE.K.FP.KQKLKEFIT.K.ALQEMLKG.I
Retrocopy
ERILKTAR*KQQVT\YKGNAIKLLADFSAETLQAKKEQYDISQVLKGKKSTTKNTLFYPAR*SLRMKGERKSFPNKQKLKEFITTKSALQEMLKGCI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide