RetrogeneDB ID:
retro_ecab_659
Organism:
Horse ( Equus_caballus )
Location:
26:30240841-30241057 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
94.44 %
Coverage:
68.57 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_659
GTGCCTTTACACTGGATTGGCTTTGGCTATGCAGCACTGGTTGCTTCTGGTGGGATCACT
GGCTATGCAAAAGCAGGTAGTGTCCCATCCCTGGCCGCTGGGCTCCTCTTCGGTGGGTTA
GCAGGCCTGGGTGCTTATCAGCTGTCTCAGGATCAGAGGAACATCTGGGGTTTCCTAGCT
ACATCTGGAACCTTGGCTGGCATTATGGGAATGAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.75
SRP021940_cerebellum 0.7
SRP021940_embryo 1.22
SRP021940_placental_villous 1.07
SRP021940_synovial_membrane 0.83
SRP021940_testis 2.31

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VPLHWIGFGYAALIASGGIIGYAKAGSVPSLAAGLLFGGLAGLGAYQLSQDPRNIWVFLATSGTLAGIMGMR
VPLHWIGFGYAAL.ASGGI.GYAKAGSVPSLAAGLLFGGLAGLGAYQLSQD.RNIW.FLATSGTLAGIMGMR
Retrocopy
VPLHWIGFGYAALVASGGITGYAKAGSVPSLAAGLLFGGLAGLGAYQLSQDQRNIWGFLATSGTLAGIMGMR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide