RetrogeneDB ID:
retro_ecab_66
Organism:
Horse ( Equus_caballus )
Location:
19:45277339-45278728 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
99.57 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
eca-mir-703
Parental gene aliases:
EEF1A1, EF-1A, EF-Tu, EF1A, eEF1A-1
Parental gene description:
eca-mir-703 [Source:miRBase;Acc:MI0012753]
Genomic region (view in browser)
>retro_ecab_66
ATGGGGAAGGAAAAGACTCATATCAACATCGTCGTCATTGGACACGTCGATTCGGGCAAG
TCCACCACGACTGGCCACCTGATCTACAAGTGCGGTGGGATCGACAAAAGAACCATCGAG
AAATTCGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTG
GATAAACTGAAAGCTGAACGTGAGCGTGGTATCACCATTGATATCTCCCTGTGGAAATTC
GAGACCAGCAAGTATTATGTGACCATCATTGATGCCCCCGGACACAGAGACTTCATCAAA
AACATGATTACAGGCACGTCTCAGGCTGACTGTGCTGTCCTCATTGTCGCTGCTGGTGTT
GGTGAATTTGAAGCAGGTATCTCCAAGAATGGGCAGACCCGTGAGCATGCCCTTCTGGCT
TACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCCA
CCTTACAGCCAGAAGAGATATGAGGAAATCGTTAAGGAAGTCAGCACCAACATTAAGAAA
ATTGGTTACAACCCAGACACAGTTGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAAC
ATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAAGAT
GGCAATGCCAGTGGAACTACACTGCTTGAAGCTCTGGATTGCATCCTGCCACCAACTCGT
CCAACTGATAAGCCCTTGCGTCTGCCCCTCCAGGACGTCTACAAAATTGGTGGTATCGGT
ACTGTCCCTGTGGGCCGAGTGGAGACTGGTGTTTTGAAACCTGGCATGGTGGTCACCTTT
GCTCCAGTCAATGTTACAACTGAAGTAAAGTCTGTTGAAATGCATCATGAAGCTTTGAGC
GAAGCTCTTCCTGGGGACAACGTGGGCTTCAATGTCAAGAACGTGTCCGTCAAAGATGTT
CGCCGTGGCAATGTGGCTGGTGACAGCAAAAATGATCCACCAATGGAAGCAGCTGGCTTC
ATAGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATCAGTGCTGGGTATGCACCTGTG
CTGGATTGTCACACAGCTCACATTGCTTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGAT
CGTCGTTCTGGAAAGAAGCTGGAAGATGGCCCCAAATTCTTGAAATCTGGTGATGCTGCC
ATCGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTTTCTGACTATCCTCCT
CTGGGCCGTTTTGCTGTTCGTGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCA
GTGGACAAGAAAGCAGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAGGCTCAGAAG
GCTAAATGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 1.51 |
| SRP021940_cerebellum | 0.35 |
| SRP021940_embryo | 2.97 |
| SRP021940_placental_villous | 0.98 |
| SRP021940_synovial_membrane | 14.69 |
| SRP021940_testis | 0.42 |
Parental protein coverage
Changes in the retrocopy sequence
