RetrogeneDB ID:
retro_ecab_660
Organism:
Horse ( Equus_caballus )
Location:
26:30987780-30988480 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.92 %
Coverage:
93.98 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
TMEM106C
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 106C [Source:HGNC Symbol;Acc:28775]

Genomic region (view in browser)





>retro_ecab_660
AAGAGAGAAGATGACAGGGAGGATTTGCAGCCTGAACAAGAGCAGGAAGGAGCCATTGCC
CAGTTCCCACATGTGGAGTACATGTGGTGAGATAGCATTACAGTCTCATGTGTCAAGGGA
CAGGTTACCTTCCAACAGAGGAAGTGAATGAGTAGGTGGGTTCAATCCCACACAGAGATC
AGAGATTGTGCCCTCAGAGAACTAAGCAGTGTGTCCTCCTGTCCACCCTGTTCTGTCTCC
TGGCATCTGAGTGGGGGTATTCTTCCTGCTTCTGCATTCAGTCCTTGCGGATGATTATAG
CATCAAAGTAGTGAAAGTCACGTTTAATAAGCAGAACTCCCCTGTAATCCTTGCCAACAT
GGCCACCCTGAAAATCAGGAACTCCAACTTCTACCCTATGGGAGGAGCCAGCCTGTCCAG
TCATGTTCAGTACATGAACACAATGTTTGGGACATATACGACAACTAATGCTTCCTTCAT
TTGACCTTGGAGTGAGCAACTGGTGAATTTTACCACAAAGGCTGAGATGGGAGTACCATT
TTCCTATGTGTGCTTTTTCTGCATAGTACCTGATGTCCTGGACCACAACATAGTGATCTT
CATGTGAACTTCCGTGAAGCTTTCATTCATTGGCCACATGACCTGGAGATCCTTGGAGAC
ACATCACTATGTGGATTGTGGAGCAAATTCCATAGCTGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKKDDREDFLAEREQEEAIAQFPYVEFTGRDSITC-LTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASG-LVVFFLFPHSVLVD
...DDRED...E.EQE.AIAQFP.VE....DSIT..L.CQGTGY.PTE.VNE.V..IPH.DQRL.PQRTKQ.VLLS.L.CLLAS....VFFL..HSVL.D
Retrocopy
KREDDREDLQPEQEQEGAIAQFPHVEYMW*DSITV/LMCQGTGYLPTEEVNE*VGSIPHRDQRLCPQRTKQCVLLSTLFCLLASE/VGVFFLLLHSVLAD


Parental protein
DDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSTQVQYMNTVVGSYVTANVSLIPPRSEHLVNFTVKAEMGGPYSYVYFFCTLPDILIHNI
D..IKVVKVTFNKQ.S.VILA..ATLKIRNSNFY.....SLS..VQYMNT..G.Y.T.N.S.I.P.SE.LVNFT.KAEMG.P.SYV.FFC..PD.L.HNI
Retrocopy
DYSIKVVKVTFNKQNSPVILANMATLKIRNSNFYPMGGASLSSHVQYMNTMFGTYTTTNASFI*PWSEQLVNFTTKAEMGVPFSYVCFFCIVPDVLDHNI


Parental protein
VIFMRTSVKISYIGHVTQSSLETHHYVDCGANSTAV
VIFM.TSVK.S.IGH.T..SLETHHYVDCGANS.AV
Retrocopy
VIFM*TSVKLSFIGHMTWRSLETHHYVDCGANSIAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide