RetrogeneDB ID:
retro_ecab_661
Organism:
Horse ( Equus_caballus )
Location:
26:440229-440775 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.02 %
Coverage:
51.84 %
Frameshifts:
0
Stop codons:
5


Parental gene:
Parental gene symbol:
HOMER2
Parental gene aliases:
No gene alias available
Parental gene description:
homer homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17513]

Genomic region (view in browser)





>retro_ecab_661
TCTGTGACATAGAGTGCTGCCAATGTGAAGAAATAGGAGAATAAGCTGCAGACCCTGCAG
AAGAGCAATGTCCGGCTGACCACGGCACTGCAGGAGTCAGTGGCCAGCATGGAGCAGTGG
AAGAGGAAGTTCTCTATCTGCCCTGAAGAGAATGACTGGCTGTGGAACAATCCTGAGGAG
TTGGAAGAACAATGCAGAGAGATAACAAAGAGAAGGAGACAAATAGTCAGTTAAAGAGAA
GAAATGAGGAGCTGGAGTCAGAACACTGAGAAAAGAAGATAGTTAAAAGACCTCCAAAAA
CAAAGTAAACTCAGACCTCAGCTCATGTCAGAGTGTGAATACATTTCTGAGCAGTTAGAG
GCAGCAAAGAGAGATAATCAAAATCAGAGAGACAAAGTGCTTTCTCTAAAGACAGACATT
GAGGAAGGTAACTACTGACCATGCCGCTTGAAGGCAGAATTGAAGAACATCTTGAAGGTG
CTGGACGGGAAGATCAATGGCCTCCACAACTTCTGTGGAGGCCTCTGCAAGCTGGGCAAG
GAAAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALTQSAANVKKWEVELQTLRESNARLTAALQESAASAEQWKRQFSVCRDENDRLRHKIDELEEQCSEINREKEKNTQLKRRIEELESELREKETELKDLR
..T.SAANVKK.E..LQTL..SN.RLT.ALQES.AS.EQWKR.FS.C..END.L.....ELEEQC.EI..................S...EK...LKDL.
Retrocopy
SVT*SAANVKK*ENKLQTLQKSNVRLTTALQESVASMEQWKRKFSICPEENDWLWNNPEELEEQCREITKRRRQIVS*REEMRSW-SQNTEKRR*LKDLQ


Parental protein
KQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKVELKNFLEVLDGKIDDLHDFRRGLSKLGTDN
KQS...PQLMSECEY.SE.LEAA.RDNQN..DKV.SLKTDIEE..Y....LK.ELKN.L.VLDGKI..LH.F..GL.KLG...
Retrocopy
KQSKLRPQLMSECEYISEQLEAAKRDNQNQRDKVLSLKTDIEEGNY*PCRLKAELKNILKVLDGKINGLHNFCGGLCKLGKES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide