RetrogeneDB ID:
retro_ecab_662
Organism:
Horse ( Equus_caballus )
Location:
26:2494602-2495036 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
89.8 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_662
GGTTACAGGCGGGTGTTTGAGGAGTACATGAGAGTTATTAGCCAGCGGTACCCGGACATC
CGCATTGAAGGAGAGAATTACCTCCCTCAACCAATATATAGACACACAGCATCTTTCCTG
TCAGTCTTCAAAATAGTATTAATTGGCTTAATTGTTGGCAAGGATCCTTTTGCTTTCTTT
GGCATGTAAGCTCCTAGCATCTGGCAGTGGCGCCAAGAAAATAAGGTCTGTGTGTGTATG
ATGGTCTTCTTCTTGAGCAACACGATTGAGGACCAGTGTATGTCAACAGGTGCATTTAGA
TAACTTTGAATGATGTACCTGTGTGGTCTAAGCTGGAATCTGGTCACCTGCCATCCATGC
AACAGCTTGTTCAAATTCTTGACAATGAAATGAAGCTGAGTGTGCATATGGATCCAATCC
CACATCATCGATCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.41
SRP021940_cerebellum 0.05
SRP021940_embryo 0.17
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.36
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMVENQCMSTGAF
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRH.ASFLSVFK.VLIGL.IVGKDPFAFFGM.APSIWQW.QENKV..CMMVFFLSN..E.QCMSTGAF
Retrocopy
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHTASFLSVFKIVLIGL-IVGKDPFAFFGM*APSIWQWRQENKVCVCMMVFFLSNTIEDQCMSTGAF


Parental protein
E-ITFNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDPIPHHGS
..IT.NDVPVWSKLESGHLPSMQQLVQILDNEMKL.VHMDPIPHH.S
Retrocopy
R/ITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLSVHMDPIPHHRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide